{"id":"W4387425100","doi":"10.1016/j.ebiom.2023.104827","title":"Characterization of highly pathogenic clade 2.3.4.4b H5N1 mink influenza viruses","year":2023,"lang":"en","type":"article","venue":"EBioMedicine","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Daiichi Sankyo Europe; National Institute of Allergy and Infectious Diseases; Otsuka Pharmaceutical; Shionogi; Japan Agency for Medical Research and Development","keywords":"Influenza A virus subtype H5N1; Virology; Clade; Biology; Outbreak; Virus; Mink; Highly pathogenic; Transmission (telecommunications); Influenza A virus; Host (biology); Phylogenetic tree; Gene; Genetics; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004720282,0.0002470641,0.0006468879,0.0008707994,0.00010841,0.000009007082,0.0001739255,0.0001424578,0.0002436683],"category_scores_gemma":[0.000777124,0.0001924832,0.0001241219,0.001861697,0.0004269509,0.0001241411,0.0001698158,0.0002563879,0.0006304578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009238904,"about_ca_system_score_gemma":0.0001581901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005661188,"about_ca_topic_score_gemma":0.00000447803,"domain_scores_codex":[0.9974362,0.00006872128,0.0006800689,0.0003574649,0.000906312,0.0005512118],"domain_scores_gemma":[0.9985504,0.0001601203,0.0001935717,0.0005189074,0.0003523286,0.0002247277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003858405,0.00009866336,0.01239737,0.0004186554,0.0001917234,0.0001119225,0.0009496897,0.000001103521,0.9759245,0.00009048521,0.003518709,0.005911321],"study_design_scores_gemma":[0.004952266,0.001152855,0.5828315,0.0006373709,0.0002052143,0.00003091005,0.0003256144,0.0001877984,0.2031605,0.00007624723,0.2061615,0.0002782521],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950083,0.0006593349,0.00003920626,0.001996404,0.0003041396,0.0006431026,0.0001208561,0.0002774099,0.0009512031],"genre_scores_gemma":[0.9905549,0.001076402,0.0002061548,0.004681171,0.001005148,0.0001032028,0.0003679959,0.00008139563,0.001923632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.772764,"threshold_uncertainty_score":0.8103469,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.106315061708461,"score_gpt":0.3922224435881122,"score_spread":0.2859073818796511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}