{"id":"W4387460522","doi":"10.3390/jof9100995","title":"Mitogenome Variations in a Global Population of Aspergillus fumigatus","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"McMaster University","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Aspergillus fumigatus; Mitochondrial DNA; Population; Phylogenetics; Genetics; Genome; Linkage disequilibrium; Multilocus sequence typing; Genotype; Gene; Haplotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003311713,0.0001750335,0.0002173935,0.0008419272,0.0002438603,0.0002748265,0.0001308234,0.0001866421,0.0007774752],"category_scores_gemma":[0.0008575472,0.00007088287,0.0002161806,0.001177936,0.0002365574,0.0001616081,0.0002832589,0.0002044038,0.000136993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001272931,"about_ca_system_score_gemma":0.00009221865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0023047,"about_ca_topic_score_gemma":0.00414473,"domain_scores_codex":[0.9997728,0.00004173758,0.00001783252,0.0001115378,0.00003066816,0.00002533625],"domain_scores_gemma":[0.9996129,0.00008279654,0.0001489758,0.00005245141,0.00006443597,0.00003849736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002870144,0.00003337419,0.9157703,0.00006026697,0.0002252048,0.0003021945,0.0009045566,0.0004703024,0.06686895,0.0001754412,0.0002537291,0.01464867],"study_design_scores_gemma":[0.000003645441,0.00004154933,0.9978268,0.000006080759,0.00003687092,0.0002647057,0.0003016982,0.0002036116,0.0006390068,0.00006956697,0.0006021548,0.000004365432],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987506,0.0001983301,0.0003542975,0.00001642682,0.000002433057,0.000003946945,0.0004228181,0.000004565686,0.0002466646],"genre_scores_gemma":[0.9984089,0.0001046184,0.0004208351,0.00001976976,0.000004507411,0.000006756728,0.000965893,0.000003363712,0.00006544639],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0023047,"threshold_uncertainty_score":0.004582524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009991103060987524,"score_gpt":0.2519447091120836,"score_spread":0.241953606051096,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}