{"id":"W4387460522","doi":"10.3390/jof9100995","title":"Mitogenome Variations in a Global Population of Aspergillus fumigatus","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"McMaster University","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Aspergillus fumigatus; Mitochondrial DNA; Population; Phylogenetics; Genetics; Genome; Linkage disequilibrium; Multilocus sequence typing; Genotype; Gene; Haplotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001338704,0.00005284244,0.0001118133,0.0000699732,0.00001497497,0.000005324244,0.0000781945,0.00005683716,0.000009259942],"category_scores_gemma":[0.00008600187,0.00004733802,0.00009483184,0.0002099651,0.000008052314,0.000004144774,0.00002428508,0.00003505858,0.000003769633],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001605374,"about_ca_system_score_gemma":0.00005316732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001491039,"about_ca_topic_score_gemma":0.00002763642,"domain_scores_codex":[0.9994383,0.00002972701,0.0002572184,0.00006608471,0.0001098062,0.00009880323],"domain_scores_gemma":[0.9996485,0.00001039459,0.0001468157,0.00007638251,0.00006723462,0.00005074043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001199352,0.00006863024,0.2185206,0.00001478297,0.00004889682,0.00004149942,0.0000159435,0.0005177812,0.7766705,0.000287561,0.0007110136,0.002982924],"study_design_scores_gemma":[0.0003522534,0.000157293,0.9953492,0.00002626759,0.00002515612,0.00004844294,0.00002411382,0.0001216783,0.001807277,0.0002945973,0.00173112,0.00006266031],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973117,0.001587045,0.0001503841,0.00004298031,0.0001940536,0.00003722968,0.0003311018,0.000002374664,0.0003430893],"genre_scores_gemma":[0.9989642,0.0004056031,0.0003274746,0.00002450153,0.0001421144,7.274098e-7,0.00008762235,0.000003957337,0.00004378112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7768285,"threshold_uncertainty_score":0.1930389,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009991103060987524,"score_gpt":0.2519447091120836,"score_spread":0.241953606051096,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}