{"id":"W4387472290","doi":"10.1128/spectrum.01722-23","title":"Meta-analysis reveals the predictable dynamic development of the gut microbiota in commercial pigs","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph","funders":"Institut National de la Recherche Agronomique; Université de Toulouse; Northern Arizona University; Wageningen University and Research; Purdue University","keywords":"Gut flora; Biology; Computational biology; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008658791,0.0002506122,0.0006538265,0.0001824341,0.0002473012,0.00001276869,0.0007534146,0.0002682564,0.0001672455],"category_scores_gemma":[0.00002546554,0.0001483481,0.0006027021,0.001029657,0.0002760818,0.00000263178,0.0004900359,0.000250168,0.00005211603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005199493,"about_ca_system_score_gemma":0.0002230726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008889103,"about_ca_topic_score_gemma":0.006931806,"domain_scores_codex":[0.9979146,0.0003362083,0.0006259511,0.0004850201,0.00005350754,0.0005847299],"domain_scores_gemma":[0.9988535,0.00004183775,0.0002391559,0.0007872121,0.0000393815,0.00003892882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002720116,0.00005088175,0.007201809,0.00001810444,0.007782466,0.000001028405,0.0002554097,0.00007297251,0.9797483,0.00002450522,0.004794019,0.00002328209],"study_design_scores_gemma":[0.001125264,0.0001665981,0.6150541,0.00001456501,0.01460582,0.00006532297,0.0002890724,0.00003271952,0.2972762,0.0001604144,0.07054672,0.0006632552],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931313,0.001281316,0.00006331677,0.004416536,0.0001988516,0.0004743241,0.0002686264,0.00001727646,0.0001484473],"genre_scores_gemma":[0.9952458,0.00009183768,0.0002627379,0.000913862,0.00003461311,0.00003568274,0.000525378,0.00002166685,0.002868432],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6824721,"threshold_uncertainty_score":0.6049458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03071730794151918,"score_gpt":0.2770560592096181,"score_spread":0.2463387512680989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}