{"id":"W4387499818","doi":"10.1101/2023.10.09.561570","title":"Emergence of <i>Acinetobacter baumannii</i> International Clone 10 predominantly found in the Middle East","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Intégré de Santé et de Services Sociaux des Laurentides; Centre intégré de santé et de services sociaux de Chaudière-Appalaches; Hôpital Charles-Le Moyne; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"","keywords":"Acinetobacter baumannii; clone (Java method); Lineage (genetic); Multilocus sequence typing; Biology; Whole genome sequencing; Plasmid; Middle East; Antibiotic resistance; Genome; Microbiology; Gene; Antibiotics; Genetics; Bacteria; Geography; Genotype; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002090935,0.0004341088,0.0003977286,0.001421118,0.0004120939,0.001231143,0.0002847169,0.000405983,0.001881453],"category_scores_gemma":[0.0005806001,0.0002246576,0.0004569579,0.001902804,0.0003954581,0.0002605551,0.0006040987,0.0006291107,0.001000217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003589574,"about_ca_system_score_gemma":0.0005227709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009341436,"about_ca_topic_score_gemma":0.006826881,"domain_scores_codex":[0.9995512,0.0000244795,0.00003377626,0.0001753347,0.00008449902,0.0001307079],"domain_scores_gemma":[0.9989704,0.00007856741,0.000403792,0.00008474399,0.0002226092,0.0002399606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009383564,0.0001884764,0.6369473,0.0001724412,0.00009917179,0.001838983,0.001480713,0.0001374852,0.3361434,0.0002037628,0.001189541,0.0206603],"study_design_scores_gemma":[0.00001864829,0.0003147346,0.9591709,0.00005461517,0.00009409346,0.003706861,0.001574552,0.0002503682,0.02602004,0.00006409411,0.008703675,0.00002730307],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966518,0.0001637072,0.0003820622,0.00004362191,0.00001425523,0.00002244168,0.001248322,0.00002675027,0.001447011],"genre_scores_gemma":[0.9917094,0.0002844962,0.001375408,0.0001937435,0.00002946915,0.00002452661,0.005057367,0.00003306604,0.001292594],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009341436,"threshold_uncertainty_score":0.01857418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03119519809863664,"score_gpt":0.2424311400955892,"score_spread":0.2112359419969525,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}