{"id":"W4387526344","doi":"10.17504/protocols.io.36wgq72n3vk5/v3","title":"HTTM : Transposon mutagenesis v3","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Transposable element; Transposon mutagenesis; Mutagenesis; Context (archaeology); Protocol (science); DNA Transposable Elements; Computer science; Genetics; Biology; Computational biology; Mutation; Mutant; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002069181,0.003152899,0.002661946,0.003059086,0.001686059,0.001838499,0.003516045,0.001886363,0.1407194],"category_scores_gemma":[0.002097784,0.002831664,0.002041421,0.002031199,0.001066923,0.001172146,0.002735339,0.006237188,0.1491842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009873252,"about_ca_system_score_gemma":0.001557693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002437833,"about_ca_topic_score_gemma":0.004987328,"domain_scores_codex":[0.9974858,0.0004354011,0.0003048033,0.0006901929,0.0007194708,0.0003643442],"domain_scores_gemma":[0.9990797,0.0002422697,0.00005455616,0.000397843,0.00009436893,0.0001312885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008646611,0.0003064648,0.0004153943,0.00252708,0.0001508808,0.0004214938,0.0004010359,0.0006471839,0.6844429,0.008810792,0.2337126,0.06729966],"study_design_scores_gemma":[0.0002921199,0.0002893336,0.001846849,0.0002786869,0.0001295934,0.001099294,0.00008443878,0.001899301,0.4108078,0.00327462,0.5797879,0.0002101053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.0132886,0.003676723,0.5816761,0.001131616,0.002437717,0.006884384,0.2365384,0.103161,0.05120555],"genre_scores_gemma":[0.0470487,0.004887874,0.3381726,0.001382735,0.000267665,0.009788272,0.3971043,0.06051754,0.1408304],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1407194,"threshold_uncertainty_score":0.4707534,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03454876240924895,"score_gpt":0.264670181921414,"score_spread":0.2301214195121651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}