{"id":"W4387563735","doi":"10.1099/mgen.0.001112","title":"Comparative genomics of Mycoplasma feriruminatoris, a fast-growing pathogen of wild Caprinae","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"International Development Research Centre; Compute Canada; Université de Sherbrooke","keywords":"Biology; Pathogen; Genomics; Mycoplasma; Microbiology; Genetics; Computational biology; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004048984,0.0002662975,0.0006806856,0.0003979414,0.0002142226,0.00001791001,0.0003786011,0.0002876631,0.0003416735],"category_scores_gemma":[0.00003881216,0.0002829079,0.0002801087,0.0005958421,0.000420695,0.0001006918,0.0003760614,0.0003037159,0.0007242014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001658104,"about_ca_system_score_gemma":0.0003790591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003858116,"about_ca_topic_score_gemma":0.00007090899,"domain_scores_codex":[0.9981222,0.0001933268,0.0006578524,0.0003999547,0.00004796465,0.000578696],"domain_scores_gemma":[0.9988799,0.0001347708,0.0002602472,0.0004414344,0.0002240632,0.00005955383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002473767,0.0001926238,0.0005438834,0.0001096555,0.0002786206,0.000007776291,0.001762937,0.0004083478,0.9912063,0.000439648,0.003822097,0.0009807588],"study_design_scores_gemma":[0.001197651,0.0001733043,0.0007560802,0.00004348129,0.00007162782,0.00006262064,0.00116486,0.00003095624,0.9284558,0.00007517164,0.06768945,0.0002790435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959174,0.0009275078,0.0001217358,0.00004921251,0.0006133901,0.0004443689,0.001210941,0.00007391509,0.0006415477],"genre_scores_gemma":[0.9978355,0.0003351751,0.0002380249,0.00003435892,0.00005481455,0.00001613352,0.0004818394,0.00003866064,0.0009654823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06386735,"threshold_uncertainty_score":0.9999623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02616427712611438,"score_gpt":0.27705927926581,"score_spread":0.2508950021396957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}