{"id":"W4387567695","doi":"10.1093/plcell/koad260","title":"Complementing model species with model clades","year":2023,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant Ecology and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Joint Genome Institute; U.S. Department of Energy; United States-Israel Binational Science Foundation; National Science Foundation","keywords":"Biology; Brassicaceae; Clade; Phylogenomics; Arabidopsis; Phylogenetic tree; Evolutionary biology; Context (archaeology); Tree of life (biology); Ecology; Gene; Genetics; Paleontology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00432575,0.0006422624,0.0007633279,0.001158937,0.002959194,0.003983015,0.002019784,0.001828429,0.01128455],"category_scores_gemma":[0.01604248,0.0005598982,0.0008691169,0.001369157,0.003442374,0.01102529,0.007367084,0.001995989,0.001405762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001573263,"about_ca_system_score_gemma":0.001275172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001704586,"about_ca_topic_score_gemma":0.003607478,"domain_scores_codex":[0.9970284,0.001821502,0.0001032916,0.0007038632,0.0002106705,0.0001323559],"domain_scores_gemma":[0.9922048,0.003334718,0.0008928982,0.0024661,0.0005131264,0.0005883658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001907435,0.0000793209,0.02063808,0.000437522,0.0001932065,0.0006239602,0.00667033,0.02565335,0.006558251,0.8867938,0.004173099,0.04798846],"study_design_scores_gemma":[0.00005673495,0.0001935841,0.005451726,0.0002595202,0.0001837257,0.0006697525,0.003912045,0.0829073,0.00142694,0.7968413,0.108021,0.00007639606],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.325507,0.00150355,0.5829843,0.005217714,0.0005001342,0.0002800564,0.000901006,0.0007928921,0.08231329],"genre_scores_gemma":[0.7751036,0.0005282307,0.2191467,0.0008970026,0.00009446606,0.0003551097,0.0009668519,0.0002713666,0.002636703],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01128455,"threshold_uncertainty_score":0.0377506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0977873283913073,"score_gpt":0.1946887760176443,"score_spread":0.09690144762633698,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}