{"id":"W4387633929","doi":"10.1093/infdis/jiad257","title":"Genomic Heterogeneity of <i>Cryptosporidium parvum</i> Isolates From Children in Bangladesh: Implications for Parasite Biology and Human Infection","year":2023,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Styrelsen för Internationellt Utvecklingssamarbete; Wellcome Trust; University of Virginia; Pharmaceutical Research and Manufacturers of America Foundation; National Institute of Allergy and Infectious Diseases; Global Affairs Canada; Bill and Melinda Gates Foundation","keywords":"Cryptosporidium parvum; Biology; Linkage disequilibrium; Nonsynonymous substitution; Parasite hosting; Genome; Genetics; Cryptosporidium; Genetic diversity; Single-nucleotide polymorphism; Adaptation (eye); Diarrhea; Genetic variation; Human pathogen; Virology; Microbiology; Genotype; Gene; Population; Feces","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002074615,0.0001867316,0.0002456089,0.0006471475,0.0002872898,0.0003127407,0.0001457377,0.0002782105,0.002843885],"category_scores_gemma":[0.0008402502,0.0001191307,0.0001221713,0.0009399139,0.000372893,0.0001306002,0.000230313,0.0002691849,0.0004857196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003884044,"about_ca_system_score_gemma":0.0002986498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01262591,"about_ca_topic_score_gemma":0.01067429,"domain_scores_codex":[0.9997566,0.00005349168,0.0000348071,0.00006764548,0.00004168543,0.00004572302],"domain_scores_gemma":[0.9995614,0.0001547764,0.0001115791,0.00002715922,0.00005723139,0.00008800685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008761062,0.00004071606,0.9358789,0.0002670136,0.00003563724,0.001491497,0.001653924,0.0001524835,0.0397652,0.0001054762,0.0009208874,0.01881216],"study_design_scores_gemma":[0.0000202195,0.0002320565,0.9928018,0.00004550126,0.00002114281,0.002044205,0.001437071,0.00004462029,0.001483143,0.00003694498,0.001824945,0.000008462112],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996578,0.0003236268,0.00007929681,0.0001120899,0.000002993415,0.00001600217,0.00222717,0.000004286503,0.0006566545],"genre_scores_gemma":[0.9975355,0.000427721,0.0001873161,0.00004834593,0.000005065462,0.00001911738,0.001567708,0.000002953494,0.00020621],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01262591,"threshold_uncertainty_score":0.02510482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01197102998565846,"score_gpt":0.2902327616911968,"score_spread":0.2782617317055384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}