{"id":"W4387671761","doi":"10.1038/s41467-023-42353-9","title":"Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; BlueDot (Canada); University of Toronto","funders":"National Center for Advancing Translational Sciences; Bill and Melinda Gates Foundation","keywords":"Salmonella typhi; Typhoid fever; Outbreak; Drug resistance; Virology; Multi drug resistant; Salmonella; Medicine; Microbiology; Biology; Bacteria; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001084033,0.0003601934,0.0002048256,0.0008246232,0.0001565416,0.0005193056,0.0001904594,0.0003708505,0.001284867],"category_scores_gemma":[0.003239792,0.0001575544,0.0003365659,0.0008125436,0.0002600299,0.0004478306,0.0007626252,0.0003145057,0.0001573426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002453954,"about_ca_system_score_gemma":0.0002550869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006816655,"about_ca_topic_score_gemma":0.008584321,"domain_scores_codex":[0.9996091,0.0001749905,0.00002715906,0.00008362645,0.00004339849,0.00006181029],"domain_scores_gemma":[0.9988474,0.0003844351,0.0004975273,0.00009297484,0.00007983731,0.00009789804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000522671,0.00001129633,0.9935113,0.00001465866,0.0001047182,0.00007424595,0.00005714054,0.002067046,0.0003398426,0.00006262614,0.0001275864,0.003577375],"study_design_scores_gemma":[0.000007712837,0.000168434,0.987586,0.00002989539,0.000098718,0.0003000672,0.0008299426,0.00959603,0.0003000726,0.0004353971,0.0006383987,0.000009243874],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965872,0.0002134554,0.001243807,0.0001281969,0.000004842183,0.00001096897,0.0007893594,0.00001384994,0.001008236],"genre_scores_gemma":[0.9986695,0.0001471912,0.0006265605,0.00002290019,0.000003503852,0.000004091604,0.0004364247,0.000002312442,0.00008755113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006816655,"threshold_uncertainty_score":0.01355398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0368954866998234,"score_gpt":0.323359394799356,"score_spread":0.2864639080995326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}