{"id":"W4387702930","doi":"10.1186/s12985-023-02207-8","title":"Differential transcriptome response following infection of porcine ileal enteroids with species A and C rotaviruses","year":2023,"lang":"en","type":"article","venue":"Virology Journal","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"International Development Research Centre","keywords":"Biology; Downregulation and upregulation; Transcriptome; Rotavirus; Gene; Immune system; Receptor; Innate immune system; Virology; Immunity; Cell culture; Immunology; Virus; Microbiology; Gene expression; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001550714,0.0002300198,0.0003370799,0.0002662727,0.0001694075,0.0004292261,0.00008199397,0.0002732896,0.0009610193],"category_scores_gemma":[0.0001680827,0.000103213,0.0003634197,0.0002908053,0.0001982173,0.0002056422,0.000282816,0.0004290187,0.0003338614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001849764,"about_ca_system_score_gemma":0.0001629167,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003496262,"about_ca_topic_score_gemma":0.000359239,"domain_scores_codex":[0.9998108,0.00002151833,0.00001222854,0.00007276225,0.00003611558,0.00004659183],"domain_scores_gemma":[0.9998713,0.00003252136,0.00002992895,0.000009892156,0.00002763104,0.00002877026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002245368,0.0000202474,0.00310067,0.00008273928,0.00001250417,0.00006157633,0.00008592814,0.00005171725,0.99514,0.00002112994,0.00004783666,0.001151102],"study_design_scores_gemma":[0.00002292507,0.002081736,0.6373513,0.00006946162,0.0001635391,0.0010595,0.001627827,0.002069581,0.348612,0.0001920943,0.006702697,0.00004729522],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939991,0.0011565,0.001189092,0.00005062983,0.00003414826,0.00002115954,0.002456642,0.00002407874,0.001068703],"genre_scores_gemma":[0.9886675,0.001057406,0.001986112,0.0001425058,0.00002328885,0.0001032821,0.005956727,0.00002265854,0.002040372],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009610193,"threshold_uncertainty_score":0.003214896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02960507166545895,"score_gpt":0.3099263560401828,"score_spread":0.2803212843747239,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}