{"id":"W4387704740","doi":"10.3389/fonc.2023.1264646","title":"Long-read sequencing of oropharyngeal squamous cell carcinoma tumors reveal diverse patterns of high-risk Human Papillomavirus integration","year":2023,"lang":"en","type":"article","venue":"Frontiers in Oncology","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"McGill University Health Centre; McGill University","keywords":"Sanger sequencing; Oncology; Human papillomavirus; Medicine; Cancer; Internal medicine; Head and neck squamous-cell carcinoma; DNA sequencing; Cancer research; Head and neck cancer; Biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003440198,0.0001702373,0.0009616324,0.0003888067,0.00006901126,0.00000185939,0.0001227926,0.0001647668,0.00005105589],"category_scores_gemma":[0.0001062901,0.0001538773,0.0001022163,0.0003468786,0.0001644729,0.00005423323,0.00009510275,0.0003124553,0.000005722867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006541747,"about_ca_system_score_gemma":0.000244942,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007577429,"about_ca_topic_score_gemma":0.001689982,"domain_scores_codex":[0.9984335,0.0001690407,0.00056392,0.0002948413,0.0002099551,0.0003287374],"domain_scores_gemma":[0.9991895,0.00009702478,0.0002886934,0.000239383,0.0001033795,0.00008203354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003905437,0.0001592615,0.9541018,0.0003245842,0.00003429815,0.0005969228,0.004546628,0.00004324432,0.007595936,0.00002583936,0.00938018,0.02280076],"study_design_scores_gemma":[0.00540885,0.004310424,0.9582109,0.0001819114,0.00019233,0.00001421335,0.008244329,0.000280329,0.02256952,0.0001776245,0.0002200085,0.0001895713],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963691,0.0004132866,0.0002988582,0.0001340935,0.0009676955,0.0003512804,0.00008007832,0.00004081375,0.001344804],"genre_scores_gemma":[0.9978062,0.0002198284,0.000946569,0.00007610517,0.0001307576,0.00003142846,0.00006957335,0.00002247294,0.0006971007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02261119,"threshold_uncertainty_score":0.9990312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02804746966426354,"score_gpt":0.3024899233654018,"score_spread":0.2744424537011382,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}