{"id":"W4387705779","doi":"10.1038/s41598-023-44469-w","title":"Species-specific microRNA discovery and target prediction in the soybean cyst nematode","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Carleton University","funders":"","keywords":"Biology; Soybean cyst nematode; Genome; Computational biology; microRNA; Effector; Gene; Genetics; Caenorhabditis elegans; Transcriptome; Gene expression; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000980805,0.0008616347,0.0005784153,0.0009495962,0.0004658041,0.000598005,0.0006614358,0.0005684632,0.001124099],"category_scores_gemma":[0.001833922,0.0003136209,0.0009364064,0.0008391164,0.0001952263,0.000476051,0.0008767341,0.0004849709,0.001198571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006071016,"about_ca_system_score_gemma":0.001027111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009243377,"about_ca_topic_score_gemma":0.01639081,"domain_scores_codex":[0.9992668,0.0001100254,0.00004557996,0.000388646,0.0001337835,0.00005510838],"domain_scores_gemma":[0.9995955,0.00018549,0.00005404655,0.0000564704,0.00007847013,0.00002997691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003922862,0.0004609294,0.1418589,0.003910518,0.001076133,0.001852823,0.0004829701,0.05994115,0.424714,0.003486144,0.1200716,0.238222],"study_design_scores_gemma":[0.0004994344,0.001110807,0.1377958,0.0002311824,0.0008453542,0.002266499,0.0006305187,0.4036897,0.2766241,0.006789843,0.169277,0.0002398613],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5923633,0.007214699,0.07438772,0.00101272,0.0002449803,0.0003340164,0.295633,0.01819419,0.01061527],"genre_scores_gemma":[0.3603585,0.001437696,0.1278729,0.0004934479,0.00003683969,0.0004066294,0.5046842,0.0007211209,0.003988611],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009243377,"threshold_uncertainty_score":0.01837915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02418101617904432,"score_gpt":0.2099924653673616,"score_spread":0.1858114491883173,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}