{"id":"W4387734681","doi":"10.1038/s41396-023-01531-9","title":"Ongoing diversification of the global fish pathogen<i>Piscirickettsia salmonis</i>through genetic isolation and transposition bursts","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fisheries and Oceans Canada","keywords":"Biology; Aquaculture; Outbreak; Genetics; Genome; Fish farming; Mobile genetic elements; Genetic diversity; Pathogen; Evolutionary biology; Zoology; Ecology; Gene; Fishery; Virology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188527,0.00009283681,0.00009555895,0.00002413308,0.0005108005,0.00002797933,0.0002113758,0.00007633721,0.00004930788],"category_scores_gemma":[0.00001144877,0.00005517885,0.00009158575,0.0002373857,0.000145835,0.00009794062,0.00005881477,0.0001512999,0.00004344737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003375312,"about_ca_system_score_gemma":0.00002028007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001540095,"about_ca_topic_score_gemma":0.00001247784,"domain_scores_codex":[0.9993118,0.0001739458,0.000190458,0.0001109661,0.00004849639,0.0001643141],"domain_scores_gemma":[0.999609,0.00002542925,0.0001666858,0.0001411764,0.00004641477,0.00001132933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000161508,0.00008068536,0.03330975,0.00004534591,0.0003446712,0.000006408457,0.005648075,0.0001895167,0.9139881,0.001133374,0.03735,0.007742582],"study_design_scores_gemma":[0.0009588888,0.0000594515,0.9739867,0.00007178075,0.0003563441,0.0001728043,0.001285423,0.0000378775,0.007117174,0.002188463,0.01363282,0.0001322272],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913897,0.0008928069,0.000967848,0.005774752,0.0004228309,0.0001899729,0.00008080125,0.00002550953,0.0002558083],"genre_scores_gemma":[0.9988505,0.0002779291,0.00003767906,0.0003035208,0.00005066064,0.000002088095,0.00005293882,0.000005470179,0.0004191898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.940677,"threshold_uncertainty_score":0.3928716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01154977285734665,"score_gpt":0.2246455381446436,"score_spread":0.2130957652872969,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}