{"id":"W4387873521","doi":"10.22541/au.169808227.79287397/v1","title":"Report of epidemic Pseudomonas aeruginosa AUST-03 (ST 242) strains and resistomes in South African cystic fibrosis patients","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Research Foundation; University of Pretoria; Department of Health and Social Care","keywords":"Pseudomonas aeruginosa; Resistome; Biology; Microbiology; Outbreak; Whole genome sequencing; Cystic fibrosis; Multiple drug resistance; Broth microdilution; Antibiotics; Antibiotic resistance; Multilocus sequence typing; Genotype; Virology; Genome; Genetics; Bacteria; Gene; Minimum inhibitory concentration","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002670596,0.000549918,0.0003801805,0.001032195,0.001034126,0.0008284193,0.0003209919,0.0008747973,0.002817938],"category_scores_gemma":[0.00135878,0.0004025092,0.0002690273,0.001307272,0.0005876261,0.000532679,0.0008561584,0.0007248907,0.0002681815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003230368,"about_ca_system_score_gemma":0.0004719878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006305485,"about_ca_topic_score_gemma":0.00530323,"domain_scores_codex":[0.9995864,0.00004078638,0.00004911722,0.0001124972,0.00008607026,0.0001251845],"domain_scores_gemma":[0.99899,0.0001461296,0.0004549575,0.00005060442,0.0001152855,0.000243066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001947018,0.00006140843,0.9695545,0.00008524718,0.00002416244,0.01609674,0.002024718,0.00003438711,0.007791294,0.00008649298,0.0004792335,0.003567154],"study_design_scores_gemma":[0.00001405663,0.0002024236,0.9490728,0.00007358912,0.00003368329,0.04505612,0.003120363,0.0001526044,0.001044516,0.00009499963,0.001114102,0.00002075156],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991431,0.0001760034,0.00005080354,0.00006975075,0.000004643808,0.0000139343,0.0001479952,0.000005480815,0.0003883071],"genre_scores_gemma":[0.9993935,0.0001845309,0.0001117921,0.00007354369,0.00001314819,0.000007832677,0.0001203311,0.000003562445,0.00009186827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006305485,"threshold_uncertainty_score":0.01253754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.019320544376005,"score_gpt":0.2696720600862321,"score_spread":0.2503515157102271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}