{"id":"W4387880229","doi":"10.1186/s12864-023-09744-0","title":"Genome-wide allele frequency studies in Pacific oyster families identify candidate genes for tolerance to ostreid herpesvirus 1 (OsHV-1)","year":2023,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Marine Bivalve and Aquaculture Studies","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shell (Canada); Vancouver Island University","funders":"Agricultural Research Service; Oregon State University; U.S. Department of Agriculture; Pacific States Marine Fisheries Commission","keywords":"Biology; Candidate gene; Genetics; Quantitative trait locus; Pacific oyster; Gene; Locus (genetics); Allele; Genome; Innate immune system; Oyster; Crassostrea; Immune system; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001913667,0.0002143767,0.0001455519,0.0006934114,0.0002623339,0.0001914065,0.0002190133,0.0001693652,0.00124362],"category_scores_gemma":[0.0002705483,0.0001163125,0.0002172464,0.0003806148,0.0001843103,0.00008153293,0.0002752909,0.0002750079,0.00009865927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001733548,"about_ca_system_score_gemma":0.0001174718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00332395,"about_ca_topic_score_gemma":0.005238777,"domain_scores_codex":[0.9998883,0.000008202229,0.000006368396,0.0000562723,0.00002471505,0.00001623598],"domain_scores_gemma":[0.999658,0.00008590084,0.0001459311,0.00001914128,0.00003876307,0.00005220634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000387971,0.00008214117,0.2598131,0.00006124756,0.0001002864,0.0002535776,0.0004402014,0.0001816957,0.7308736,0.00008065873,0.0000810135,0.007644517],"study_design_scores_gemma":[0.000009451652,0.00007143629,0.9931606,0.000003534459,0.00003556418,0.0002200497,0.00009846913,0.0003365591,0.005807602,0.00002964312,0.0002233548,0.000003673896],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992488,0.00004049001,0.0003944403,0.000004779284,7.064553e-7,0.000003902952,0.0001519839,0.000006586461,0.0001482708],"genre_scores_gemma":[0.9980198,0.00004602602,0.0009765187,0.00001351792,0.000001450514,0.00001311102,0.0004614622,0.000008493666,0.0004595369],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00332395,"threshold_uncertainty_score":0.006609201,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04097865143962909,"score_gpt":0.2974107566893855,"score_spread":0.2564321052497564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}