{"id":"W4387910292","doi":"10.1016/j.isci.2023.108319","title":"Genomic and transcriptomic characterization of delta SARS-CoV-2 infection in free-ranging white-tailed deer (Odocoileus virginianus)","year":2023,"lang":"en","type":"article","venue":"iScience","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Dalhousie University; Public Health Agency of Canada; Ministry of Natural Resources and Forestry; Canadian Food Inspection Agency; University of Saskatchewan; Environment and Climate Change Canada; University of British Columbia; Sinai Health System; Sunnybrook Health Science Centre; University of Waterloo; Ministère des Ressources naturelles et des Forêts; University of Toronto","funders":"Government of Saskatchewan; Dalhousie University; Ministry of Agriculture - Saskatchewan; Public Health Agency; Natural Sciences and Engineering Research Council of Canada; bioMérieux; Canada Foundation for Innovation; Public Health Agency of Canada; Association of Medical Microbiology and Infectious Disease Canada; Canadian Institutes of Health Research; Sunnybrook Research Institute; Canadian Food Inspection Agency","keywords":"Odocoileus; Biology; Transcriptome; Innate immune system; Host (biology); Immune system; Gene; Virology; Genetics; Gene expression; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005482362,0.0001348503,0.0001506702,0.0004358229,0.0002107315,0.0002233286,0.00007660407,0.0001621794,0.0004731556],"category_scores_gemma":[0.0001025173,0.00009137733,0.0001257196,0.0003156219,0.000199036,0.00006263006,0.00009687641,0.0001353498,0.0001571865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002488142,"about_ca_system_score_gemma":0.0002317947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008806388,"about_ca_topic_score_gemma":0.02732569,"domain_scores_codex":[0.9999342,0.000003394023,0.000003329037,0.00002638391,0.00001242527,0.00002032264],"domain_scores_gemma":[0.9999033,0.00001323239,0.00002893347,0.00000638996,0.00002257953,0.00002556811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002324099,0.00002973215,0.0625374,0.00002603518,0.00001161888,0.0001805587,0.0001261025,0.00005402941,0.9354679,0.00002455919,0.0000563461,0.001253317],"study_design_scores_gemma":[0.000004886655,0.0001425206,0.9817013,0.00000516534,0.00001354655,0.0004734747,0.0003753954,0.0002644246,0.01624762,0.00002142731,0.000745683,0.000004491176],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997877,0.00008007482,0.0001305596,0.000007839624,0.000001374926,0.000008033645,0.001711188,0.000003244754,0.000180544],"genre_scores_gemma":[0.9916661,0.0001462787,0.0008316939,0.00006235598,0.000004205376,0.00003082471,0.006111105,0.000005954883,0.00114139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008806388,"threshold_uncertainty_score":0.01751024,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0312923256806355,"score_gpt":0.2463493512336188,"score_spread":0.2150570255529833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}