{"id":"W4387950425","doi":"10.1128/spectrum.02378-23","title":"<i>Chlamydia suis</i>displays high transformation capacity with complete cloning vector integration into the chromosomal<i>rrn-nqrF</i>plasticity zone","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"UZH Foundation; Schweizerische Akademie der Medizinischen Wissenschaften; Universität Zürich; Universität zu Lübeck; Université Laval; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Chlamydia trachomatis; Plasmid; Genetics; Obligate; Vector (molecular biology); Gene; Horizontal gene transfer; Chlamydiaceae; Microbiology; Genome; Virology; Transformation (genetics); Ecology; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007677574,0.0004153499,0.0004968658,0.0003713694,0.001121147,0.00006189221,0.0004810076,0.0004089901,0.0006713637],"category_scores_gemma":[0.0001617735,0.0002798255,0.0001369051,0.001081634,0.001335629,0.000286946,0.0001137969,0.001316625,0.002726564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002671179,"about_ca_system_score_gemma":0.0001284329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002477625,"about_ca_topic_score_gemma":0.003630077,"domain_scores_codex":[0.9970494,0.0006815178,0.0005164277,0.0007478692,0.00006425464,0.0009405603],"domain_scores_gemma":[0.9984501,0.0005669116,0.0001955848,0.0005681801,0.0001771266,0.000042096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003305243,0.0001227401,0.001910073,0.00002374305,0.000287567,0.000008746699,0.002598749,0.0001964607,0.9881271,0.004030645,0.001915261,0.0004483849],"study_design_scores_gemma":[0.001847393,0.0008669607,0.06721701,0.00006285955,0.0001035731,0.0008704652,0.0005717319,0.00006979553,0.9036356,0.000630651,0.02360073,0.0005232679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987436,0.0001673411,0.005515124,0.00378304,0.00101169,0.0009102255,0.0002205586,0.0004214133,0.0005346226],"genre_scores_gemma":[0.9969309,0.00007587042,0.0001369796,0.0001326136,0.0001639066,0.0001539816,0.001335316,0.00004302917,0.00102739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08449154,"threshold_uncertainty_score":0.9999654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01699107848987913,"score_gpt":0.236866078348337,"score_spread":0.2198749998584579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}