{"id":"W4387950425","doi":"10.1128/spectrum.02378-23","title":"<i>Chlamydia suis</i>displays high transformation capacity with complete cloning vector integration into the chromosomal<i>rrn-nqrF</i>plasticity zone","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"UZH Foundation; Schweizerische Akademie der Medizinischen Wissenschaften; Universität Zürich; Universität zu Lübeck; Université Laval; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Chlamydia trachomatis; Plasmid; Genetics; Obligate; Vector (molecular biology); Gene; Horizontal gene transfer; Chlamydiaceae; Microbiology; Genome; Virology; Transformation (genetics); Ecology; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004938396,0.0004713388,0.0004499472,0.0004911298,0.0002354295,0.0004947155,0.0005355985,0.0003756375,0.001378103],"category_scores_gemma":[0.000384568,0.0002629556,0.0005344315,0.0004062786,0.0002813211,0.0001733192,0.0005772306,0.0007505206,0.000975323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00035995,"about_ca_system_score_gemma":0.0002926136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001922228,"about_ca_topic_score_gemma":0.001894257,"domain_scores_codex":[0.9993722,0.0000911681,0.0001084729,0.0001270618,0.000176629,0.0001244327],"domain_scores_gemma":[0.9995252,0.0001201624,0.0001149023,0.0001430187,0.00003912969,0.00005766036],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002011565,0.00002759391,0.0001847228,0.00002854356,0.00000475497,0.00002758326,0.00001720914,0.00002799287,0.9984124,0.000107605,0.00004254764,0.001098907],"study_design_scores_gemma":[0.000008663397,0.0001736171,0.005429371,0.00001276814,0.00003103299,0.0003944785,0.00003125763,0.0007809036,0.9880509,0.00004724259,0.005025736,0.00001397489],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9630114,0.0009121664,0.02929556,0.000154808,0.00008055841,0.0002075026,0.002609945,0.0007276029,0.003000405],"genre_scores_gemma":[0.9671874,0.0004961471,0.01833945,0.00004339246,0.0000129228,0.0001516636,0.007747008,0.0002445765,0.005777421],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001922228,"threshold_uncertainty_score":0.004610181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01699107848987913,"score_gpt":0.236866078348337,"score_spread":0.2198749998584579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}