{"id":"W4387959554","doi":"10.1080/23802359.2023.2270206","title":"The complete mitochondrial genome of <i>Cyphocaris challengeri</i> (Amphipoda: Cyphocarididae)","year":2023,"lang":"en","type":"article","venue":"Mitochondrial DNA Part B","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"NOAA Pacific Marine Environmental Laboratory; Fisheries and Oceans Canada; National Oceanic and Atmospheric Administration; Division of Ocean Sciences; EarthLab, University of Washington; University of Washington","keywords":"Mitochondrial DNA; Biology; Phylogenetic tree; Illumina dye sequencing; Genome; Amphipoda; Evolutionary biology; DNA sequencing; Gene; Phylogenetics; Genetics; Computational biology; Zoology; Crustacean","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000208284,0.0003290263,0.0003906737,0.00006244436,0.0004475203,0.00004990184,0.0006040451,0.0002126406,0.00001649386],"category_scores_gemma":[0.000152844,0.0002643222,0.0003234231,0.0002784721,0.0003403827,0.000001674818,0.0004491832,0.0001415096,0.00011708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001895457,"about_ca_system_score_gemma":0.0001139111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003792328,"about_ca_topic_score_gemma":0.0001548109,"domain_scores_codex":[0.9977516,0.000132606,0.0005743839,0.0005933458,0.0003178656,0.0006302144],"domain_scores_gemma":[0.9985044,0.0001070005,0.0002148868,0.0008827852,0.0001600648,0.0001308909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002579068,0.00003442685,0.0001781547,0.00001574396,0.0002392857,0.000004060309,0.0001574352,0.0001098648,0.9798975,0.0004546282,0.01801576,0.0006352171],"study_design_scores_gemma":[0.001289458,0.0004087049,0.003782454,0.00001154565,0.00005820474,0.000006769728,0.0002000715,0.00003389758,0.07059085,0.0003901462,0.9228558,0.0003720935],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9814536,0.005355189,0.0001660522,0.001235083,0.007110583,0.0008774548,0.000451609,0.00004065517,0.003309752],"genre_scores_gemma":[0.9815625,0.007250303,0.0006350208,0.0002499884,0.006743313,0.0002914852,0.0003899372,0.0001159472,0.00276153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9093066,"threshold_uncertainty_score":0.9999809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02151685195401505,"score_gpt":0.2356069637777996,"score_spread":0.2140901118237845,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}