{"id":"W4387959554","doi":"10.1080/23802359.2023.2270206","title":"The complete mitochondrial genome of <i>Cyphocaris challengeri</i> (Amphipoda: Cyphocarididae)","year":2023,"lang":"en","type":"article","venue":"Mitochondrial DNA Part B","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"NOAA Pacific Marine Environmental Laboratory; Fisheries and Oceans Canada; National Oceanic and Atmospheric Administration; Division of Ocean Sciences; EarthLab, University of Washington; University of Washington","keywords":"Mitochondrial DNA; Biology; Phylogenetic tree; Illumina dye sequencing; Genome; Amphipoda; Evolutionary biology; DNA sequencing; Gene; Phylogenetics; Genetics; Computational biology; Zoology; Crustacean","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001607957,0.0004345234,0.000278315,0.00101789,0.0006684325,0.0004597034,0.0003202986,0.0004841838,0.001706039],"category_scores_gemma":[0.0006252963,0.0002084527,0.0003519876,0.001044103,0.0002306219,0.0003770535,0.0004094876,0.0006444529,0.001124046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004176307,"about_ca_system_score_gemma":0.000920607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006144562,"about_ca_topic_score_gemma":0.01145081,"domain_scores_codex":[0.9998763,0.00001025656,0.00001012729,0.0000492418,0.00003419533,0.00001985655],"domain_scores_gemma":[0.9995121,0.00008222583,0.0001375533,0.00005618358,0.0001276526,0.00008443095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004960932,0.000048665,0.01275965,0.000598175,0.00006641688,0.000454998,0.0004052714,0.0007149025,0.9560202,0.0004664852,0.001534363,0.02643471],"study_design_scores_gemma":[0.0001111331,0.0006274916,0.7480903,0.0004445951,0.0004190421,0.003354777,0.0008167647,0.004237047,0.12606,0.000710835,0.1150075,0.0001204184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9139462,0.002026022,0.01080469,0.0003417619,0.00006503309,0.0001653434,0.06753223,0.00024416,0.004874537],"genre_scores_gemma":[0.6612032,0.002502078,0.04283075,0.0002695773,0.00008220687,0.0002866206,0.2879662,0.0002098433,0.004649488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006144562,"threshold_uncertainty_score":0.01221758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02151685195401505,"score_gpt":0.2356069637777996,"score_spread":0.2140901118237845,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}