{"id":"W4387963268","doi":"10.1093/gbe/evad194","title":"Long-Read–Based Genome Assembly Reveals Numerous Endogenous Viral Elements in the Green Algal Bacterivore <i>Cymbomonas tetramitiformis</i>","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Weill Cornell Medical College; National Marine Biodiversity Institute of Korea; Ewha Womans University; National Science Foundation","keywords":"Biology; Genome; Giant Virus; Sequence assembly; Genome size; Gene; Genetics; Illumina dye sequencing; Evolutionary biology; Computational biology; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009240589,0.0001920946,0.0002290801,0.00007381518,0.0004662726,0.00001131656,0.000438517,0.0002728508,0.0006049179],"category_scores_gemma":[0.00002573509,0.0001539787,0.00005594011,0.0003373896,0.0003844188,0.00009924493,0.0002371888,0.0003313778,0.0006950271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001444624,"about_ca_system_score_gemma":0.00002155727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001062177,"about_ca_topic_score_gemma":0.002413858,"domain_scores_codex":[0.9980747,0.0006254365,0.0003283059,0.0003399311,0.00006858315,0.0005630236],"domain_scores_gemma":[0.9993601,0.0001387743,0.0001140807,0.0003226881,0.000006905112,0.00005743452],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001301575,0.000145726,0.3468376,0.0000203876,0.0000301067,0.00003278187,0.000971987,0.0002665384,0.6502137,0.0003658269,0.0002029541,0.0007822189],"study_design_scores_gemma":[0.0004627127,0.0003612975,0.9917369,0.000003341019,0.00001585132,0.00004785711,0.00009544479,0.000129205,0.0000972428,0.003482326,0.003370896,0.0001968826],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975345,0.0001283363,0.00008142553,0.0004056959,0.0001454109,0.0003742352,0.00009026883,0.00004892045,0.001191205],"genre_scores_gemma":[0.9978247,0.00005492202,0.00005820008,0.0008896669,0.00006994047,0.00005013896,0.000887362,0.00001051546,0.0001545687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6501164,"threshold_uncertainty_score":0.8933398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01863010738274665,"score_gpt":0.2380704268143248,"score_spread":0.2194403194315782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}