{"id":"W4387963268","doi":"10.1093/gbe/evad194","title":"Long-Read–Based Genome Assembly Reveals Numerous Endogenous Viral Elements in the Green Algal Bacterivore <i>Cymbomonas tetramitiformis</i>","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Weill Cornell Medical College; National Marine Biodiversity Institute of Korea; Ewha Womans University; National Science Foundation","keywords":"Biology; Genome; Giant Virus; Sequence assembly; Genome size; Gene; Genetics; Illumina dye sequencing; Evolutionary biology; Computational biology; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002909184,0.0003186952,0.0003056743,0.000472064,0.0003523205,0.0005571669,0.00022997,0.0003199549,0.0006963053],"category_scores_gemma":[0.000558501,0.0002517521,0.0007077793,0.0004047106,0.0001694148,0.0003415802,0.0003596087,0.0004903075,0.0004545819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000434224,"about_ca_system_score_gemma":0.0004098795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003190543,"about_ca_topic_score_gemma":0.005852703,"domain_scores_codex":[0.9997739,0.0000189886,0.00001729464,0.00009727036,0.00005923293,0.00003332059],"domain_scores_gemma":[0.9997609,0.00006655652,0.00004175942,0.00003178862,0.00006065197,0.00003833233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002363401,0.00002611316,0.004550418,0.0001127349,0.00005083324,0.0001976909,0.0001841445,0.001471085,0.9852864,0.0002333958,0.0002096816,0.007441133],"study_design_scores_gemma":[0.00005020412,0.000412515,0.14366,0.0000709978,0.0002996574,0.0007222154,0.0004455127,0.06562447,0.7708688,0.0008096671,0.01693156,0.0001043734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9671542,0.000742223,0.02720194,0.00008389712,0.00003299056,0.00003424151,0.002934449,0.0006479887,0.001168011],"genre_scores_gemma":[0.896024,0.0004826284,0.08052883,0.0001591369,0.00002129006,0.0000835378,0.01985511,0.0005399365,0.002305636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003190543,"threshold_uncertainty_score":0.006343961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01863010738274665,"score_gpt":0.2380704268143248,"score_spread":0.2194403194315782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}