{"id":"W4387965572","doi":"10.1093/gbe/evad196","title":"Population Genomics of the Facultatively Sexual Liverwort <i>Marchantia polymorpha</i>","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bryophyte Studies and Records","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome Canada; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Asexual reproduction; Marchantia polymorpha; Sexual reproduction; Evolutionary biology; Population; Genetic diversity; Genomics; Genetics; Gene flow; Genome; Subspecies; Nucleotide diversity; Genetic variation; Gene; Ecology; Haplotype; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001258484,0.00006601882,0.0001036032,0.00000747289,0.0002859678,0.000003244159,0.00008308183,0.00007806454,0.0000137509],"category_scores_gemma":[0.00001188403,0.00002192205,0.00003566045,0.0002532855,0.0001219933,0.00002433393,0.0001151978,0.00005189614,0.00001086341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001692558,"about_ca_system_score_gemma":0.000003989616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009127157,"about_ca_topic_score_gemma":0.0005064629,"domain_scores_codex":[0.9994896,0.00005563527,0.0001158179,0.0001475541,0.00003815427,0.0001532162],"domain_scores_gemma":[0.9998229,0.0000400056,0.00006982484,0.00002167372,0.00002523665,0.00002042019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003902249,0.00002008965,0.5135887,0.0000129131,0.00003945791,2.866446e-7,0.0002558123,0.0000141723,0.4604612,0.001161721,0.0003693803,0.0240373],"study_design_scores_gemma":[0.00005263178,0.0001097935,0.9920862,0.000002200248,0.000007726509,0.000002139404,0.0003391774,0.00005412394,0.00004504086,0.0009342338,0.006309987,0.00005673688],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981465,0.000648505,0.00000659738,0.0005089555,0.0003774216,0.0001042844,0.0001104565,0.00002406451,0.00007323243],"genre_scores_gemma":[0.9990577,0.0002575183,0.00001410091,0.0000355588,0.0003273848,0.000004052311,0.00008042201,4.527406e-7,0.0002228022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4784975,"threshold_uncertainty_score":0.2199462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01615156894628012,"score_gpt":0.2211582850104666,"score_spread":0.2050067160641865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}