{"id":"W4387973460","doi":"10.1186/s12862-023-02167-1","title":"Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum","year":2023,"lang":"en","type":"article","venue":"BMC Ecology and Evolution","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Dental and Craniofacial Research; National Institute of Child Health and Human Development; National Institute of Arthritis and Musculoskeletal and Skin Diseases; American Heart Association; National Institute of General Medical Sciences; National Institute on Aging; National Institutes of Health; York University","keywords":"Notochord; Chordate; Biology; Deuterostome; Evolutionary biology; Ciona; Vertebrate; Evolutionary developmental biology; Ciona intestinalis; Gene; Genetics; Anatomy; Embryogenesis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002114696,0.0000876331,0.000126827,0.00003869769,0.0001350253,0.000007918082,0.00007265822,0.000101604,0.000001728807],"category_scores_gemma":[0.00006720504,0.00006659731,0.00002202916,0.0001097453,0.0001237471,0.000006172306,0.0001537212,0.00004753873,0.000002266951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004061112,"about_ca_system_score_gemma":0.00002321732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008515867,"about_ca_topic_score_gemma":0.001614632,"domain_scores_codex":[0.999261,0.0001216476,0.0001519394,0.0002377465,0.00004967678,0.0001779431],"domain_scores_gemma":[0.9996909,0.00002191713,0.00005291795,0.0001760712,0.00002548241,0.00003273071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001995866,0.0001324063,0.5908704,0.00001588782,0.00001039571,0.0000013506,0.0003480183,0.00007165425,0.407864,0.000009035684,0.0001592695,0.0003179523],"study_design_scores_gemma":[0.001003365,0.0002112691,0.9731224,0.000003568545,0.00001634418,0.000003631617,0.002188903,0.0001055353,0.02304289,0.00009144584,0.0001377268,0.0000729035],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981712,0.001268447,0.00005303531,0.00002571309,0.00009630841,0.0003288062,0.00002404635,0.000009202841,0.0000233068],"genre_scores_gemma":[0.9992214,0.0004054825,0.00008863887,0.00002997825,0.00006296976,0.0000837683,0.0000370837,0.000006994085,0.00006361412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3848211,"threshold_uncertainty_score":0.2715759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01151928932147332,"score_gpt":0.2618189780307262,"score_spread":0.2502996887092528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}