{"id":"W4388014878","doi":"10.1111/jbg.12831","title":"Genomic background of biotypes related to growth, carcass and meat quality traits in Duroc pigs based on principal component analysis","year":2023,"lang":"en","type":"article","venue":"Journal of Animal Breeding and Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Candidate gene; Quantitative trait locus; Genome-wide association study; Genetic architecture; Genetics; Trait; Sire; Single-nucleotide polymorphism; Principal component analysis; Population; Beef cattle; Biotechnology; Gene; Genotype; Animal science; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004933692,0.0001446721,0.0003261809,0.0002948168,0.00005000622,0.00001882581,0.0001322151,0.0001272064,0.000005120264],"category_scores_gemma":[0.00005806965,0.0001319774,0.0001028056,0.0003575863,0.00008030394,0.000002807731,0.0000738274,0.0001476255,0.000001103975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001170371,"about_ca_system_score_gemma":0.00004936763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001778679,"about_ca_topic_score_gemma":0.00003153148,"domain_scores_codex":[0.9987725,0.00009615039,0.0005153645,0.0002274425,0.0001991827,0.0001893414],"domain_scores_gemma":[0.9993706,0.00006692269,0.0001984747,0.0001015512,0.0001191294,0.0001433267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008526205,0.0001224839,0.2457041,0.00007931473,0.0003221392,0.000005847027,0.0005156401,0.01147067,0.7392672,0.0006088202,0.00009827578,0.0009528471],"study_design_scores_gemma":[0.0007584262,0.002581208,0.9858682,0.00003093359,0.0001374996,0.00001410948,0.0003261558,0.000596001,0.009288508,0.0001439949,0.000108965,0.0001459548],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987865,0.0004592004,0.0002767607,0.000204681,0.00006142534,0.00008051981,0.0000253778,0.000003259955,0.0001022725],"genre_scores_gemma":[0.9953583,0.0001663397,0.004294896,0.00006541621,0.00006555744,8.127786e-7,0.000009486397,0.00001270548,0.00002647504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7401641,"threshold_uncertainty_score":0.538188,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03243861169902423,"score_gpt":0.2938206114265485,"score_spread":0.2613819997275242,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}