{"id":"W4388014878","doi":"10.1111/jbg.12831","title":"Genomic background of biotypes related to growth, carcass and meat quality traits in Duroc pigs based on principal component analysis","year":2023,"lang":"en","type":"article","venue":"Journal of Animal Breeding and Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Candidate gene; Quantitative trait locus; Genome-wide association study; Genetic architecture; Genetics; Trait; Sire; Single-nucleotide polymorphism; Principal component analysis; Population; Beef cattle; Biotechnology; Gene; Genotype; Animal science; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000382406,0.0002983297,0.0003438613,0.001021053,0.0002652538,0.0005073434,0.0001960015,0.0002160934,0.001982443],"category_scores_gemma":[0.0008949951,0.0001452114,0.0005383926,0.00147482,0.0002492772,0.00008753371,0.0003626217,0.0002725573,0.0003095988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001992422,"about_ca_system_score_gemma":0.0002031676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004749102,"about_ca_topic_score_gemma":0.005035671,"domain_scores_codex":[0.999532,0.00007309035,0.00002952799,0.0002345534,0.00005022397,0.00008054398],"domain_scores_gemma":[0.999329,0.0002359959,0.0002024582,0.00009075618,0.00005669842,0.00008515914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003470657,0.0002214561,0.8178023,0.0001236092,0.0004426316,0.00138639,0.0005765494,0.002367525,0.1249185,0.0004348424,0.0008671804,0.04738848],"study_design_scores_gemma":[0.00001728787,0.00007657743,0.9962904,0.00001079989,0.00006879817,0.0001906142,0.00008524478,0.001523143,0.0009362231,0.00008588329,0.0007049159,0.00001010571],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966848,0.00004529121,0.0009336931,0.00001480084,0.000003006198,0.000009810374,0.002019637,0.000014809,0.0002740463],"genre_scores_gemma":[0.9874845,0.00007265812,0.002310902,0.00002767175,0.000006479289,0.00004575905,0.009414957,0.00002343889,0.0006137174],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004749102,"threshold_uncertainty_score":0.009442866,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03243861169902423,"score_gpt":0.2938206114265485,"score_spread":0.2613819997275242,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}