{"id":"W4388099794","doi":"10.7554/elife.92307","title":"Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter","year":2023,"lang":"en","type":"article","venue":"eLife","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Marsden Fund; Biomolecular Interaction Centre, University of Canterbury; Science for Life Laboratory; Stockholms Universitet; National Institute of General Medical Sciences; Umeå Universitet; Australian Cancer Research Foundation; Royal Society Te Apārangi; Knut och Alice Wallenbergs Stiftelse; Canterbury Medical Research Foundation; Kempestiftelserna; Australian Institute of Nuclear Science and Engineering; Ministry of Business, Innovation and Employment; Australian Synchrotron; Australian Nuclear Science and Technology Organisation; Kempe Foundation","keywords":"Periplasmic space; Trap (plumbing); Haemophilus influenzae; Transporter; Structural biology; Microbiology; Biology; Chemistry; Cell biology; Biochemistry; Physics; Escherichia coli; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008744928,0.0001638295,0.0001184233,0.00008062393,0.0001876428,0.0001701457,0.0002878274,0.0003051923,0.0003268331],"category_scores_gemma":[0.0002020643,0.00009633712,0.000184493,0.0001209422,0.0001482546,0.0001496124,0.0001234599,0.0003364642,0.0001448642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003804077,"about_ca_system_score_gemma":0.0002101462,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002744192,"about_ca_topic_score_gemma":0.001957349,"domain_scores_codex":[0.9999533,0.000006690265,0.000003213047,0.000009431295,0.00001967978,0.000007774682],"domain_scores_gemma":[0.9999391,0.000009652965,0.00001393782,0.000005542698,0.00001387167,0.00001798035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001011936,0.00003248872,0.0009564301,0.00004082646,0.000009646827,0.000207785,0.00004610626,0.001842333,0.9954367,0.0002137687,0.0001106742,0.001002008],"study_design_scores_gemma":[0.0000552855,0.0004308092,0.07369231,0.00002108404,0.00005864739,0.00132014,0.0003800197,0.07864975,0.8386803,0.000456245,0.006207258,0.00004802843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980305,0.0002216665,0.001083516,0.0000836281,0.000004624136,0.000004090305,0.0001696745,0.00001766758,0.0003846834],"genre_scores_gemma":[0.9952639,0.0003586002,0.002680694,0.00004264742,0.000004816672,0.00000803398,0.0009925107,0.00001205339,0.0006366205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002744192,"threshold_uncertainty_score":0.005456448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01511596024059211,"score_gpt":0.2553500549534256,"score_spread":0.2402340947128335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}