{"id":"W4388109277","doi":"10.7554/elife.92307.1","title":"Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter","year":2023,"lang":"en","type":"preprint","venue":"","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Marsden Fund; Biomolecular Interaction Centre, University of Canterbury; Science for Life Laboratory; Umeå Universitet; Australian Cancer Research Foundation; Royal Society Te Apārangi; Knut och Alice Wallenbergs Stiftelse; Stockholms Universitet; Canterbury Medical Research Foundation; Kempestiftelserna; Australian Synchrotron; Kempe Foundation; Australian Nuclear Science and Technology Organisation; Australian Institute of Nuclear Science and Engineering","keywords":"Periplasmic space; Trap (plumbing); Haemophilus influenzae; Transporter; Chemistry; Computational biology; Biophysics; Microbiology; Biology; Physics; Biochemistry; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000813536,0.0001604964,0.0001163182,0.00008300487,0.0001690912,0.0002188526,0.0002547114,0.0003007829,0.0003743116],"category_scores_gemma":[0.0001634365,0.00008365448,0.0001766356,0.000130101,0.0001312533,0.0001285773,0.0001271828,0.0002622688,0.0001735921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002999379,"about_ca_system_score_gemma":0.0001314317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002509711,"about_ca_topic_score_gemma":0.001209429,"domain_scores_codex":[0.9999597,0.000006099007,0.000002464012,0.000008482722,0.00001526044,0.000007929678],"domain_scores_gemma":[0.9999493,0.000008980869,0.00001110704,0.00000520495,0.00001117216,0.00001423327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001136579,0.00003075414,0.001133246,0.00003536821,0.00001043984,0.0002277329,0.0000482805,0.001846478,0.9955767,0.0001443021,0.00009071357,0.0007422554],"study_design_scores_gemma":[0.00005363175,0.0004247436,0.0680469,0.00001712066,0.00005043524,0.001031675,0.0003428967,0.0703535,0.8546693,0.0003957249,0.004574863,0.00003929163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985215,0.0001478866,0.0008161878,0.00005129311,0.000004041158,0.000003048885,0.0001663492,0.0000178259,0.0002718428],"genre_scores_gemma":[0.9967501,0.000179859,0.001680716,0.00001965851,0.000003710474,0.000004690617,0.0008935708,0.00001194616,0.0004557891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002509711,"threshold_uncertainty_score":0.00499022,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02366447697308724,"score_gpt":0.2666780514986503,"score_spread":0.243013574525563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}