{"id":"W4388210621","doi":"10.1016/j.jiph.2023.10.036","title":"Emerging novel sequence types of Staphylococcus aureus in Pakistan","year":2023,"lang":"en","type":"article","venue":"Journal of Infection and Public Health","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Qatar National Library","keywords":"Staphylococcus aureus; Sequence (biology); Microbiology; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001510956,0.0000875613,0.0003627545,0.0007056438,0.00005511038,0.00001878264,0.0000398936,0.00006315106,0.00003557557],"category_scores_gemma":[0.0003046469,0.00007346936,0.00007462146,0.000995494,0.00007032633,0.0001602296,0.00001822366,0.0003091207,0.00000256748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001852687,"about_ca_system_score_gemma":0.0008547385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004436625,"about_ca_topic_score_gemma":0.0002599522,"domain_scores_codex":[0.9986411,0.00006505121,0.0006871202,0.0001007432,0.0002410694,0.0002649428],"domain_scores_gemma":[0.9988088,0.00008492432,0.0004897233,0.00009816434,0.0002938422,0.000224555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003130612,0.0005656588,0.8301597,0.001333424,0.0001370359,0.00009089208,0.00287038,0.0002049513,0.06282278,0.002850934,0.007130755,0.09152041],"study_design_scores_gemma":[0.002535508,0.001029762,0.9117011,0.0007298124,0.00001605507,0.0001518123,0.0009973545,0.0004287186,0.0005731687,0.0001777225,0.08151043,0.0001485218],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903287,0.0003199722,0.001681457,0.006800781,0.0002593766,0.0001462405,0.000008829456,0.00002123702,0.0004333881],"genre_scores_gemma":[0.9969785,0.00191135,0.0004043439,0.0005179712,0.0001040056,0.000001231076,0.000002764761,0.00001079671,0.00006904043],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09137189,"threshold_uncertainty_score":0.2995994,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05965326572212202,"score_gpt":0.3903036071325576,"score_spread":0.3306503414104356,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}