{"id":"W4388214172","doi":"10.1371/journal.pntd.0011733","title":"Phylogenomics of Leptospira santarosai, a prevalent pathogenic species in the Americas","year":2023,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Universidade Federal Fluminense; Institute of Veterinary Bacteriology, University of Bern; Institut Pasteur; Massey University; Sveučilište u Zagrebu","keywords":"Phylogenomics; Leptospira; Biology; Zoology; Evolutionary biology; Virology; Phylogenetics; Leptospirosis; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003051115,0.0003737957,0.0003475106,0.001849243,0.0005548312,0.0008314319,0.0002324857,0.0003303155,0.0006201891],"category_scores_gemma":[0.0006147988,0.0001363234,0.0004701403,0.002446882,0.0002643185,0.0002617023,0.0004881262,0.0003201346,0.0002084078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004859708,"about_ca_system_score_gemma":0.0004427753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009371575,"about_ca_topic_score_gemma":0.009806033,"domain_scores_codex":[0.9997225,0.00003419931,0.0000178658,0.0001192815,0.00005043948,0.00005572885],"domain_scores_gemma":[0.9995277,0.00007922138,0.00017331,0.0000393218,0.0001206984,0.00005971213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007864783,0.000107387,0.6890298,0.0007793551,0.0006382102,0.000620928,0.002188177,0.001646403,0.2693574,0.0005171198,0.001830735,0.03249802],"study_design_scores_gemma":[0.000008781102,0.00005818444,0.9907387,0.00005340909,0.0001066971,0.0003074246,0.0007160635,0.001371873,0.001694393,0.0001543266,0.004781478,0.000008635455],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911819,0.001509077,0.0004895502,0.0001120077,0.000006556276,0.00001491505,0.00561442,0.00002976158,0.001041944],"genre_scores_gemma":[0.9853992,0.0008555839,0.001698489,0.0001102751,0.00001329136,0.00001989858,0.01160223,0.00002703381,0.0002739312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009371575,"threshold_uncertainty_score":0.01863408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02834703988955289,"score_gpt":0.2586197974512528,"score_spread":0.2302727575616999,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}