{"id":"W4388230158","doi":"10.1101/2023.10.31.564978","title":"Genes acquired by horizontal gene transfer share common regulatory patterns in <i>Photorhabdus laumondii</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sinorhizobium meliloti; Photorhabdus; Gene; Natural product; Biology; Horizontal gene transfer; Gene product; Genetics; Enhancer; Psychological repression; Biosynthesis; Gene transfer; Gene expression; Biochemistry; Genome; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007241754,0.0002779867,0.0001390631,0.0003883651,0.0001463904,0.0003288444,0.0001267859,0.0002127151,0.0009535599],"category_scores_gemma":[0.000174194,0.0001571768,0.0002523106,0.00024125,0.0001717377,0.0001422088,0.0002809608,0.0005095789,0.0003822617],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004757405,"about_ca_system_score_gemma":0.0002153028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001972426,"about_ca_topic_score_gemma":0.001861264,"domain_scores_codex":[0.9998974,0.000009747344,0.000008569012,0.00003191934,0.00002550386,0.00002690586],"domain_scores_gemma":[0.9998211,0.00003640787,0.00006629426,0.00002752286,0.00002217619,0.00002650571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004415488,0.00001298384,0.0007206356,0.00001379718,0.000002262426,0.00004632138,0.00002633078,0.00002104328,0.9981974,0.00004856944,0.00001445991,0.0008520487],"study_design_scores_gemma":[0.00001728866,0.0002410492,0.07399137,0.00001301127,0.00001961413,0.0004275192,0.0001729587,0.0007112726,0.9222927,0.0001087907,0.001991682,0.00001288927],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959138,0.0002687167,0.001961713,0.00005954312,0.00000986278,0.00003379183,0.0004849011,0.00009252522,0.001175162],"genre_scores_gemma":[0.9924473,0.0001733138,0.002660308,0.00004242658,0.000004972586,0.00004872143,0.001434461,0.00006074152,0.003127681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001972426,"threshold_uncertainty_score":0.003921926,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01338779890387364,"score_gpt":0.1959899581872707,"score_spread":0.1826021592833971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}