{"id":"W4388374052","doi":"10.1101/2023.11.04.564800","title":"Genomic structures and regulation patterns at HPV integration sites in cervical cancer","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Cancer Institute; Department of Obstetrics and Gynecology, University of Wisconsin-Madison; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"Cervical cancer; Cancer; Biology; Human papillomavirus; Computational biology; Oncology; Genetics; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001387435,0.00007726964,0.0001461007,0.0005274744,0.0001531874,0.0003393598,0.00007976705,0.0001600398,0.001127941],"category_scores_gemma":[0.0003637549,0.0001105233,0.0001100093,0.0004918065,0.0001618299,0.0001127427,0.0001740909,0.0001934353,0.0002222154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002121965,"about_ca_system_score_gemma":0.0001280913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001409156,"about_ca_topic_score_gemma":0.00142194,"domain_scores_codex":[0.9999017,0.00001336345,0.000005735938,0.00003554185,0.00002371249,0.00002001501],"domain_scores_gemma":[0.9997826,0.00005094151,0.00007384782,0.00002123423,0.00004304585,0.00002831763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004569536,0.00002668125,0.1504485,0.00009004174,0.00004702772,0.0001240645,0.0003689838,0.0003623426,0.8388637,0.0002736237,0.000118384,0.008819717],"study_design_scores_gemma":[0.000006792483,0.00011738,0.8977996,0.00001186422,0.00004395323,0.0005122509,0.0002822599,0.001080652,0.09854229,0.0003124982,0.001282631,0.00000799723],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969895,0.001010612,0.0008285662,0.00003119055,0.000002335125,0.000005036694,0.0004529795,0.00002529246,0.0006544314],"genre_scores_gemma":[0.9984212,0.0001910002,0.0005876317,0.00001197926,0.000001901467,0.00000540516,0.0004189458,0.000005279144,0.0003567382],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001409156,"threshold_uncertainty_score":0.003773272,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03793505377946715,"score_gpt":0.2977158671830343,"score_spread":0.2597808134035672,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}