{"id":"W4388490419","doi":"10.1186/s13015-023-00240-4","title":"Relative timing information and orthology in evolutionary scenarios","year":2023,"lang":"en","type":"article","venue":"Algorithms for Molecular Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Stockholms Universitet; Deutsche Forschungsgemeinschaft","keywords":"Extant taxon; Combinatorics; Vertex (graph theory); Graph; Time complexity; Computer science; Biology; Mathematics; Theoretical computer science; Discrete mathematics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00199732,0.0007660997,0.000721015,0.002332053,0.001644201,0.002411675,0.001795455,0.001821479,0.007367108],"category_scores_gemma":[0.01582051,0.0008292964,0.001374564,0.002886017,0.002238646,0.008618729,0.001903981,0.002252083,0.0008287604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001971127,"about_ca_system_score_gemma":0.001251937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001780836,"about_ca_topic_score_gemma":0.001979034,"domain_scores_codex":[0.9981595,0.0005820305,0.0001268863,0.0006315898,0.00031854,0.0001814872],"domain_scores_gemma":[0.9879631,0.008660353,0.0008837949,0.001451366,0.0006259668,0.0004154749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0005022267,0.0002314354,0.01079352,0.0007974078,0.0001065781,0.0009172079,0.001371371,0.1849706,0.005766375,0.6813866,0.0062616,0.1068952],"study_design_scores_gemma":[0.00002044474,0.00003447623,0.001081393,0.00004651911,0.00003150299,0.0004487893,0.0002121186,0.1173915,0.001797812,0.8749796,0.003929364,0.00002641817],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2008871,0.0006116458,0.7811496,0.002070144,0.00008465279,0.0002479497,0.003263345,0.001776192,0.009909277],"genre_scores_gemma":[0.7091494,0.0004589727,0.2832461,0.0002788338,0.00008819136,0.000166352,0.004217862,0.0003195577,0.002074778],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007367108,"threshold_uncertainty_score":0.02464545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01593339747570286,"score_gpt":0.2869197491809849,"score_spread":0.270986351705282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}