{"id":"W4388571327","doi":"10.1016/j.ympev.2023.107964","title":"Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean","year":2023,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"Russian Science Foundation; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences; Genome British Columbia","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Lineage (genetic); Phylogenetics; Paraphyly; Halotolerance; Zoology; Ecology; Gene; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003242327,0.0001825531,0.0001737458,0.0001074096,0.0001351705,0.00003316565,0.0001739108,0.0001797538,0.000004195536],"category_scores_gemma":[0.0000299215,0.0001732039,0.00007021862,0.0002141693,0.0001806866,0.000003908389,0.0001840995,0.0001060633,0.000003905995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001873705,"about_ca_system_score_gemma":0.00004123697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006795952,"about_ca_topic_score_gemma":0.00005114916,"domain_scores_codex":[0.9987271,0.000181358,0.0002453188,0.0003585235,0.0001931473,0.0002945719],"domain_scores_gemma":[0.9995263,0.00001585409,0.0001005202,0.0002241084,0.00006745721,0.0000657474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009147575,0.00008992568,0.01730121,0.00003387557,0.00007187477,0.00003452027,0.0001596393,0.001247862,0.9800034,0.000270943,0.0000472965,0.0006479648],"study_design_scores_gemma":[0.002462837,0.001421365,0.7477321,0.00005108015,0.0001746143,0.00004272693,0.0003897996,0.005045878,0.2403009,0.001743992,0.0001555729,0.0004790817],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965443,0.001334329,0.0013642,0.000106872,0.00005614085,0.0003985191,0.0001096329,0.00001021082,0.00007582048],"genre_scores_gemma":[0.9986898,0.0005359281,0.000316358,0.0001146263,0.00004214896,0.0000134136,0.0002508786,0.00001651533,0.00002035609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7397025,"threshold_uncertainty_score":0.7063048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007034534380666449,"score_gpt":0.2074244923056968,"score_spread":0.2003899579250303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}