{"id":"W4388588751","doi":"10.1093/neuonc/noad179.0508","title":"EPCO-46. CHARACTERIZING ATYPICAL TERATOID RHABDOID TUMOR SUBTYPE ENHANCER INTERACTION LANDSCAPE","year":2023,"lang":"en","type":"article","venue":"Neuro-Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Enhancer; SMARCB1; Biology; PDGFRB; DNA methylation; Epigenetics; Genetics; Histone; Epigenomics; Chromatin immunoprecipitation; Gene; Genome; Computational biology; Cancer research; Promoter; Chromatin remodeling; Transcription factor; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001693156,0.0001836299,0.0002340128,0.00007656932,0.0001042938,0.00002968886,0.0001770408,0.0001997833,0.0001858435],"category_scores_gemma":[0.0001375322,0.0001770347,0.0001097151,0.0001685723,0.00005130249,0.000008269128,0.0001466432,0.0002566207,0.0003603271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004645782,"about_ca_system_score_gemma":0.000170829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006575405,"about_ca_topic_score_gemma":0.00002520365,"domain_scores_codex":[0.9986289,0.0001254449,0.0002851013,0.0004792921,0.0001191108,0.0003621199],"domain_scores_gemma":[0.9993324,0.00005814989,0.0001301306,0.0003054872,0.00007310472,0.0001007578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003453949,0.00004894569,0.0007060829,0.00001725485,0.00002171763,0.00004011127,0.00008406746,0.00005369126,0.9703881,0.000009254025,0.01318395,0.0151015],"study_design_scores_gemma":[0.0006291016,0.0005930574,0.001521957,0.00001662155,0.00001633132,0.0001500574,0.00009819473,0.001472106,0.4648208,0.00001979113,0.5304559,0.000206067],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943637,0.0001694543,0.0001380395,0.0009904195,0.001565906,0.0001457178,0.00001376707,0.0001013224,0.00251169],"genre_scores_gemma":[0.9955611,0.0004540053,0.0001303003,0.002137339,0.001126689,0.00006120944,0.0001974011,0.00004271677,0.0002892799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5172719,"threshold_uncertainty_score":0.7219265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01740175606500304,"score_gpt":0.3006351737492741,"score_spread":0.283233417684271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}