{"id":"W4388588751","doi":"10.1093/neuonc/noad179.0508","title":"EPCO-46. CHARACTERIZING ATYPICAL TERATOID RHABDOID TUMOR SUBTYPE ENHANCER INTERACTION LANDSCAPE","year":2023,"lang":"en","type":"article","venue":"Neuro-Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Enhancer; SMARCB1; Biology; PDGFRB; DNA methylation; Epigenetics; Genetics; Histone; Epigenomics; Chromatin immunoprecipitation; Gene; Genome; Computational biology; Cancer research; Promoter; Chromatin remodeling; Transcription factor; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001044855,0.0001763153,0.0001738539,0.0008394524,0.0001900594,0.000327133,0.0001826475,0.0002408242,0.00403365],"category_scores_gemma":[0.0002036241,0.0001090192,0.0001476552,0.000558686,0.0001153107,0.0001266743,0.0001900042,0.0001669518,0.001147989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001852872,"about_ca_system_score_gemma":0.0001407212,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009419664,"about_ca_topic_score_gemma":0.001628715,"domain_scores_codex":[0.9998636,0.000008704923,0.000009935334,0.00004477486,0.00004157824,0.00003135014],"domain_scores_gemma":[0.9998486,0.00001801098,0.00005028642,0.00001818744,0.00002415838,0.00004070525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004557261,0.00005049373,0.227921,0.0001674217,0.00005441538,0.002229578,0.0001037395,0.0005891086,0.7528383,0.0005092423,0.0007665223,0.01431446],"study_design_scores_gemma":[0.00002859435,0.0001675843,0.7422444,0.00003943879,0.0001548855,0.01706062,0.0002855916,0.006516609,0.2144262,0.0007429351,0.01831638,0.00001677831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906079,0.0009173343,0.002450993,0.00003795003,0.000005936944,0.00002649736,0.002345588,0.0001377523,0.003470237],"genre_scores_gemma":[0.9939179,0.0001915085,0.001507256,0.0000328862,0.000003881501,0.00002686785,0.002925474,0.00003249996,0.001361648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00403365,"threshold_uncertainty_score":0.0134939,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01740175606500304,"score_gpt":0.3006351737492741,"score_spread":0.283233417684271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}