{"id":"W4388627772","doi":"10.3390/jof9111104","title":"Genomic Epidemiology Identifies Azole Resistance Due to TR34/L98H in European Aspergillus fumigatus Causing COVID-19-Associated Pulmonary Aspergillosis","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Wellcome; Canadian Institute for Advanced Research; Medical Research Council; Sight Research UK; Wellcome Trust","keywords":"Aspergillus fumigatus; Biology; Population; Microbiology; Genotype; Aspergillosis; Drug resistance; Virology; Genetics; Immunology; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005765892,0.0002671542,0.001103851,0.000647932,0.0001905802,0.00002615347,0.0002486932,0.0001648849,0.0001557871],"category_scores_gemma":[0.007605145,0.0002346794,0.0003771272,0.001111353,0.0001248109,0.0001731341,0.0001263431,0.0006612011,0.0001852086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001038183,"about_ca_system_score_gemma":0.000451795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001023777,"about_ca_topic_score_gemma":0.001035915,"domain_scores_codex":[0.9960405,0.0008648181,0.001518913,0.0004293217,0.0004406432,0.0007058017],"domain_scores_gemma":[0.9970374,0.001003951,0.0005835817,0.0004173422,0.000276123,0.0006816788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003295797,0.0004255559,0.7840018,0.0004500165,0.0003808505,0.0245312,0.002069016,0.00100008,0.1399052,0.000209927,0.03933678,0.004393713],"study_design_scores_gemma":[0.001051693,0.0001945548,0.9868888,0.0004685864,0.0001114767,0.0003022777,0.0009378372,0.0001398917,0.0003658961,0.0006924566,0.008612462,0.0002340202],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839669,0.004772005,0.0001960718,0.007214716,0.0005660165,0.0002629137,0.000032055,0.00006931144,0.002919959],"genre_scores_gemma":[0.9912744,0.001250592,0.0003267317,0.002802805,0.0003366507,0.000003398412,0.00002089252,0.00005143419,0.003933053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.202887,"threshold_uncertainty_score":0.9569947,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06224259294100916,"score_gpt":0.3423208450402265,"score_spread":0.2800782520992174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}