{"id":"W4388627772","doi":"10.3390/jof9111104","title":"Genomic Epidemiology Identifies Azole Resistance Due to TR34/L98H in European Aspergillus fumigatus Causing COVID-19-Associated Pulmonary Aspergillosis","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Wellcome; Canadian Institute for Advanced Research; Medical Research Council; Sight Research UK; Wellcome Trust","keywords":"Aspergillus fumigatus; Biology; Population; Microbiology; Genotype; Aspergillosis; Drug resistance; Virology; Genetics; Immunology; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003181457,0.0002276816,0.0002686593,0.001273653,0.0002734413,0.000541836,0.0002129225,0.0005384989,0.001262745],"category_scores_gemma":[0.0008832111,0.0001123199,0.0003113152,0.0008588519,0.0003534137,0.000159552,0.0003472278,0.0002392729,0.000283661],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000170444,"about_ca_system_score_gemma":0.0001082126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001598701,"about_ca_topic_score_gemma":0.001220059,"domain_scores_codex":[0.9996108,0.00009638627,0.00005055443,0.0001255408,0.00005556226,0.00006114531],"domain_scores_gemma":[0.9994899,0.00009297044,0.0002202022,0.00004586234,0.00007405056,0.00007706197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009067172,0.0001507761,0.8587408,0.00005690997,0.0001658379,0.003687517,0.0006959585,0.0004403016,0.1158142,0.000253185,0.000350495,0.01873735],"study_design_scores_gemma":[0.00001300265,0.0002363396,0.9903443,0.00001856494,0.00004846764,0.004631113,0.0004038368,0.0003626336,0.002947909,0.00006875147,0.0009159252,0.000009047364],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990655,0.0001533009,0.0002488587,0.00002459975,0.000002446679,0.000005869352,0.0001640985,0.000005065337,0.000330226],"genre_scores_gemma":[0.9993831,0.00008107873,0.0001868689,0.0000325239,0.000004424016,0.000002620935,0.0002310242,0.000003069255,0.00007531202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001598701,"threshold_uncertainty_score":0.00422436,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06224259294100916,"score_gpt":0.3423208450402265,"score_spread":0.2800782520992174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}