{"id":"W4388636220","doi":"10.1111/nph.19364","title":"<i>Pseudomonas syringae</i> coffee blight is associated with the horizontal transfer of plasmid‐encoded type III effectors","year":2023,"lang":"en","type":"article","venue":"New Phytologist","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Pseudomonas syringae; Effector; Plasmid; Horizontal gene transfer; Biology; Pseudomonadales; Microbiology; Pseudomonas; Pseudomonadaceae; Blight; Botany; Genetics; Bacteria; Gene; Pathogen; Cell biology; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001766951,0.0003066431,0.0002194519,0.0005254141,0.0003540066,0.0005728569,0.0001042554,0.0002009611,0.0008869806],"category_scores_gemma":[0.0003903431,0.0001249744,0.0002544486,0.0004919183,0.0003012697,0.0002029459,0.0003556103,0.0002951681,0.0002225048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003074481,"about_ca_system_score_gemma":0.0003153001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002336504,"about_ca_topic_score_gemma":0.002460123,"domain_scores_codex":[0.9997918,0.00002323649,0.00001303461,0.00005331174,0.00004949153,0.00006921392],"domain_scores_gemma":[0.9995111,0.00004854916,0.000293466,0.00003250636,0.00004481546,0.00006959985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001569164,0.0000358452,0.06859662,0.0001127756,0.00002898871,0.0002920778,0.0002289375,0.000143893,0.9234269,0.0001550909,0.00008959963,0.006732525],"study_design_scores_gemma":[0.00001037159,0.0002477278,0.8473852,0.00003045496,0.00007711762,0.00237529,0.0005718977,0.001001306,0.1442982,0.0003894826,0.00358897,0.00002396578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978971,0.0003325074,0.0008038012,0.00005562657,0.000003621414,0.000009951461,0.0002092996,0.00003003623,0.0006581006],"genre_scores_gemma":[0.9987883,0.0001597304,0.0005576166,0.00002013285,0.000004470835,0.000004286475,0.0002671754,0.000006805024,0.0001914927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002336504,"threshold_uncertainty_score":0.004645824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03357742351150121,"score_gpt":0.249424932475313,"score_spread":0.2158475089638118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}