{"id":"W4388671867","doi":"10.1139/gen-2022-0106","title":"Genetic diversity and positive signatures of selection in indigenous cattle breeds of Iran","year":2023,"lang":"en","type":"article","venue":"Genome","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Domestication; Inbreeding; Genetic diversity; Candidate gene; Runs of Homozygosity; Quantitative trait locus; Genetics; Population; Single-nucleotide polymorphism; Coat; Evolutionary biology; Genome; Bovine genome; Genetic variation; Selection (genetic algorithm); Adaptation (eye); Genotype; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005046276,0.0001412957,0.0002590836,0.001023225,0.0003766916,0.0003021816,0.000191674,0.0001316268,0.0007407272],"category_scores_gemma":[0.0005103535,0.00008582983,0.0002600875,0.00072363,0.0003175388,0.0001108392,0.0002094978,0.0001767625,0.00006899203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001856165,"about_ca_system_score_gemma":0.0002101023,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004218908,"about_ca_topic_score_gemma":0.006636613,"domain_scores_codex":[0.9996777,0.00008552162,0.00002417402,0.00009496401,0.00006456557,0.00005311065],"domain_scores_gemma":[0.9997315,0.00006398182,0.00008819367,0.00002367384,0.00005148989,0.00004112432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002896351,0.00007390715,0.9587842,0.0000335651,0.0002811028,0.0003450462,0.001846905,0.0002209545,0.01773215,0.0001899937,0.0001268721,0.02007565],"study_design_scores_gemma":[0.000008286345,0.00005815382,0.9984901,0.000004696314,0.00004151273,0.0002392365,0.0004067086,0.0002002695,0.0002172576,0.00008552175,0.000243679,0.000004490576],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996337,0.00007251767,0.0001006876,0.00001041682,0.000001420791,0.000001697575,0.00003280303,0.000001478187,0.0001452599],"genre_scores_gemma":[0.999467,0.00006526706,0.0002424887,0.00001231108,0.00000650509,0.000003434499,0.0001055177,0.000001494022,0.00009598294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004218908,"threshold_uncertainty_score":0.008388698,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008655162200311843,"score_gpt":0.2125317116979439,"score_spread":0.203876549497632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}