{"id":"W4388734295","doi":"10.1128/aac.00860-23","title":"Plasmid genomic epidemiology of <i>bla</i> <sub>KPC</sub> carbapenemase-producing <i>Enterobacterales</i> in Canada, 2010–2021","year":2023,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Hospital Edmonton; Saskatchewan Health; Saskatchewan Health Authority; Sunnybrook Health Science Centre; Jewish General Hospital; Ottawa Hospital; University of Alberta Hospital; Health Sciences Centre; University Health Network; Sinai Health System; Moncton Hospital; Children's Hospital of Eastern Ontario; Queen Elizabeth II Health Sciences Centre; Royal Jubilee Hospital; Vancouver Coastal Health Research Institute; North York General Hospital; McGill University Health Centre; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Plasmid; Epidemiology; Molecular epidemiology; Biology; Genetics; Microbiology; Medicine; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002404264,0.0004497174,0.0003183187,0.002562482,0.001600096,0.001082438,0.000609305,0.0003378063,0.001247446],"category_scores_gemma":[0.0007519932,0.0002510039,0.0004073571,0.003621035,0.0006923348,0.0001891292,0.0004860893,0.0004233991,0.00018715],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01716549,"about_ca_system_score_gemma":0.0243136,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.989246,"about_ca_topic_score_gemma":0.9891043,"domain_scores_codex":[0.9994617,0.00001320376,0.00001940022,0.0001079357,0.0002388863,0.0001588075],"domain_scores_gemma":[0.9985604,0.00004339593,0.0001892478,0.00002599336,0.0008948313,0.0002861988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004026147,0.00007658741,0.9507645,0.0002011354,0.0000951588,0.0004214312,0.001460368,0.001105443,0.0237225,0.0002971712,0.002018812,0.01943419],"study_design_scores_gemma":[0.000004603554,0.00003987582,0.9954625,0.0000223121,0.00002169797,0.0001260329,0.0009356909,0.0005506398,0.000760703,0.00001546809,0.002047684,0.0000127531],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887871,0.0008238858,0.0004148111,0.0001761282,0.000010985,0.00006461128,0.007889776,0.00003671801,0.001795863],"genre_scores_gemma":[0.9923806,0.0005857387,0.0006705128,0.00008359597,0.000004447366,0.00001832953,0.004903348,0.0000116549,0.001341772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01716549,"threshold_uncertainty_score":0.1245449,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0126305473924448,"score_gpt":0.2298909364523586,"score_spread":0.2172603890599138,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}