{"id":"W4388749505","doi":"10.1101/2023.11.16.567488","title":"Phylogenomics and phylodynamics of Zika Virus from Asia","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Earl Haig Secondary School","funders":"","keywords":"Zika virus; Viral phylodynamics; Outbreak; Phylogenomics; Demographic history; Population; Evolutionary biology; Biology; Effective population size; Coalescent theory; Phylogenetics; Virology; Geography; Clade; Virus; Demography; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005223976,0.0002934294,0.0003533869,0.001294418,0.0004447272,0.0009165582,0.0002069601,0.000206051,0.00110406],"category_scores_gemma":[0.001175069,0.0001751602,0.0006104881,0.001867096,0.0002641756,0.0005645326,0.0007402555,0.000657491,0.0002841214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000463169,"about_ca_system_score_gemma":0.000392253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005158307,"about_ca_topic_score_gemma":0.00463076,"domain_scores_codex":[0.9997602,0.00005171602,0.00001308634,0.00008382771,0.00003321417,0.00005786211],"domain_scores_gemma":[0.9994918,0.0001235176,0.0001411157,0.00006147579,0.0001121082,0.0000699939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005457808,0.00007239253,0.8625258,0.0004703779,0.0007019751,0.0004142895,0.001579556,0.01541668,0.08207605,0.001722884,0.002242663,0.0322316],"study_design_scores_gemma":[0.00001873218,0.00009296829,0.9563364,0.00009301981,0.0002962265,0.0004335977,0.001638284,0.02618743,0.005542871,0.001861658,0.007459932,0.00003879648],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917417,0.00066261,0.002005527,0.0001493858,0.000006973445,0.000009126871,0.004240795,0.00004479654,0.001139267],"genre_scores_gemma":[0.9884865,0.0003942145,0.002198807,0.00005563445,0.000005567125,0.00001042535,0.008608076,0.00003304469,0.0002077906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005158307,"threshold_uncertainty_score":0.01025659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01441742134146124,"score_gpt":0.2274285084694147,"score_spread":0.2130110871279534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}