{"id":"W4388750641","doi":"10.1101/2023.11.16.567398","title":"Outbreak of Highly Pathogenic Avian Influenza Virus H5N1 in Seals in the St. Lawrence Estuary, Quebec, Canada","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency; Université de Montréal; Cegep de Saint Hyacinthe","funders":"Canadian Wildlife Health Cooperative; Oxford Nanopore Technologies","keywords":"Influenza A virus subtype H5N1; Phoca; Outbreak; Marine mammal; Influenza A virus; Biology; Virus; Virology; Zoology; Geography; Fishery","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000348346,0.0002681454,0.0001975556,0.0005094672,0.002998225,0.000647418,0.0004354948,0.0005487872,0.001215733],"category_scores_gemma":[0.0004401373,0.0001360672,0.0001856912,0.000620044,0.0005847616,0.0001542107,0.0004171887,0.0004772063,0.0001362365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01187549,"about_ca_system_score_gemma":0.01113255,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9797471,"about_ca_topic_score_gemma":0.9908173,"domain_scores_codex":[0.9997607,0.00001884376,0.00001075538,0.00003070384,0.00009120579,0.00008789757],"domain_scores_gemma":[0.9992542,0.00003256265,0.0001030777,0.00001805236,0.0003699732,0.0002221382],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001666195,0.00005097666,0.9824173,0.00003639817,0.00004874043,0.002788809,0.001502915,0.0001987825,0.005420983,0.00007881201,0.002342077,0.004947659],"study_design_scores_gemma":[0.000008066734,0.00007419092,0.9944693,0.00001849361,0.00001271981,0.0003838802,0.002453122,0.0003636776,0.0003443353,0.00001292211,0.001850595,0.000008748411],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971129,0.0001373832,0.00009080892,0.0002496925,0.00001929543,0.00003135418,0.0006554156,0.00001561847,0.001687553],"genre_scores_gemma":[0.998342,0.00009369364,0.0001262817,0.00014636,0.000008031543,0.000005294475,0.0003130072,0.000002515095,0.0009627949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02025294,"threshold_uncertainty_score":0.08616316,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04868335954305226,"score_gpt":0.2979177174888925,"score_spread":0.2492343579458402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}