{"id":"W4388924630","doi":"10.1101/2023.11.21.568195","title":"Giant genes are rare but implicated in cell wall degradation by predatory bacteria","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; University of Waterloo","funders":"","keywords":"Biology; Genome; Gene; Giant Virus; Bacterial genome size; Genetics; Actinobacteria; In silico; ENCODE; Comparative genomics; Metagenomics; Computational biology; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001374059,0.0002895123,0.0002535864,0.000625226,0.0003109497,0.0004297663,0.0001324699,0.0004801226,0.001302304],"category_scores_gemma":[0.0004844199,0.0001736958,0.0001880504,0.0005323117,0.0004216792,0.0002568744,0.0004778363,0.0002400519,0.0004618449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002025301,"about_ca_system_score_gemma":0.0002278861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006641267,"about_ca_topic_score_gemma":0.0009603218,"domain_scores_codex":[0.9998333,0.00001473618,0.00001108623,0.00005359454,0.00005742161,0.00002974171],"domain_scores_gemma":[0.9996402,0.0001013355,0.0001267823,0.00004092674,0.00003788666,0.00005276451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002877857,0.00001813355,0.0296709,0.0002482145,0.00005194936,0.001473623,0.0002162533,0.0002932491,0.9566167,0.000544237,0.0005940778,0.0099848],"study_design_scores_gemma":[0.00003615419,0.000233542,0.6736404,0.0001486281,0.0001607271,0.01408292,0.0008870264,0.003064581,0.2745597,0.00316564,0.02996965,0.00005083813],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936343,0.001722555,0.001483249,0.0001167982,0.00002159333,0.000006662351,0.001471016,0.0001470947,0.00139664],"genre_scores_gemma":[0.9918069,0.0005858502,0.002381168,0.00007610083,0.00001696629,0.000008029539,0.003467399,0.00005113306,0.001606497],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001302304,"threshold_uncertainty_score":0.004356623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01503734207300328,"score_gpt":0.2101178169780011,"score_spread":0.1950804749049978,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}