{"id":"W4388966445","doi":"10.1101/2023.11.23.565566","title":"Avian influenza viruses in wild birds in Canada following incursions of highly pathogenic H5N1 virus from Eurasia in 2021/2022","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland; Government of Yukon; Nova Scotia Department of Agriculture; Ministry of Natural Resources and Forestry; Agriculture Food and Rural Development; Canadian Science Centre for Human and Animal Health; Government of Newfoundland and Labrador; University of Calgary; Ministry of Environment; University of Guelph; Ministère des Ressources naturelles et des Forêts; Alberta Environment and Protected Areas; Government of Nunavut; Government of Northwest Territories; Canadian Food Inspection Agency; University of Saskatchewan; Université de Montréal; University of Prince Edward Island; University of British Columbia; Ministère de l’Environnement, de la Lutte contre les changements climatiques, de la Faune et des Parcs; Environment and Climate Change Canada; Yukon Department of Environment; Government of Canada","funders":"","keywords":"Flyway; Influenza A virus subtype H5N1; Avian influenza virus; Highly pathogenic; Biology; Clade; Range (aeronautics); Influenza A virus; Geography; Zoology; Virology; Virus; Ecology; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003772103,0.0003695789,0.0002238345,0.0007304209,0.001885403,0.0008125819,0.0004928105,0.0002953513,0.0006104175],"category_scores_gemma":[0.0005473191,0.0002165967,0.0002392143,0.0008801952,0.0004744869,0.0001955482,0.0004736879,0.0005585489,0.0001131918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008871313,"about_ca_system_score_gemma":0.007282293,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9715162,"about_ca_topic_score_gemma":0.9919676,"domain_scores_codex":[0.9996065,0.00001803384,0.00001343719,0.00005296429,0.0001693733,0.0001396347],"domain_scores_gemma":[0.9991425,0.00002605375,0.0001429121,0.00001627689,0.0004645874,0.0002075072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001494788,0.00005077399,0.9899949,0.00003584244,0.00005048621,0.0002612857,0.0004762732,0.0001492328,0.003071191,0.00002024938,0.0008865112,0.00485364],"study_design_scores_gemma":[0.000002602625,0.00003637831,0.9985532,0.000007861639,0.000007531664,0.00005324397,0.0006145122,0.0001276866,0.0002077005,0.000003193106,0.0003826128,0.000003554376],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963562,0.0003024733,0.0001136474,0.00009638153,0.00001496483,0.00004595924,0.001856819,0.00001275413,0.001200814],"genre_scores_gemma":[0.9957638,0.0002556751,0.0003155047,0.0001524709,0.000005635367,0.00001577319,0.002402958,0.000003038267,0.001085188],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02848381,"threshold_uncertainty_score":0.06436622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04860234938231757,"score_gpt":0.3010138145111121,"score_spread":0.2524114651287945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}