{"id":"W4388999475","doi":"10.1186/s40168-023-01703-x","title":"Multi-site microbiota alteration is a hallmark of kidney stone formation","year":2023,"lang":"en","type":"article","venue":"Microbiome","topic":"Kidney Stones and Urolithiasis Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Lawson Health Research Institute; Western University","funders":"W. Garfield Weston Foundation","keywords":"Biology; Metagenomics; Gut flora; Pyrosequencing; Microbiome; Microbial ecology; Microbiology; Ecology; Bacteria; Genetics; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001631279,0.000253784,0.0003155801,0.0009332685,0.0003194517,0.0003764578,0.0002012055,0.000432058,0.01369875],"category_scores_gemma":[0.0004363731,0.0001012432,0.0003748583,0.00087827,0.0001812417,0.0002620054,0.0004980811,0.0003441215,0.0008179757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002910569,"about_ca_system_score_gemma":0.0004451703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007046422,"about_ca_topic_score_gemma":0.01023645,"domain_scores_codex":[0.9998745,0.00001375153,0.000005351776,0.00002144071,0.00005910645,0.00002588422],"domain_scores_gemma":[0.9997824,0.00003129371,0.00008401966,0.000009878946,0.00003935666,0.00005315275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003489482,0.000183036,0.2616459,0.002246379,0.0003208744,0.004273038,0.0006739659,0.0009064451,0.3564896,0.001734388,0.03781196,0.3302251],"study_design_scores_gemma":[0.00006417824,0.0005322153,0.9199477,0.0004361345,0.00018656,0.008493758,0.0008768645,0.002250965,0.03215053,0.001279737,0.03373394,0.00004747489],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9222547,0.01384517,0.01087721,0.002706076,0.0005695883,0.0003396471,0.03226896,0.0007202098,0.01641842],"genre_scores_gemma":[0.9549218,0.008840054,0.01475423,0.0004742985,0.000197754,0.000105792,0.009804721,0.00007448833,0.0108268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01369875,"threshold_uncertainty_score":0.04582691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02575273420509377,"score_gpt":0.2941920512957175,"score_spread":0.2684393170906237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}