{"id":"W4389031359","doi":"10.1093/ofid/ofad500.629","title":"560. Circulating <i>Pneumocystis jirovecii</i> Genotypes in Central-Eastern Canada","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec; Centre intégré universitaire de santé et de services sociaux de l'Est-de-l'Île-de-Montréal; Ste. Anne's Hospital; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Hôpital Maisonneuve-Rosemont; Université de Sherbrooke","funders":"Moderna; Pfizer","keywords":"DHPS; Multilocus sequence typing; Genotyping; Pneumocystis jirovecii; Typing; Dihydropteroate synthase; Genotype; Molecular epidemiology; Population; Outbreak; Biology; Genetics; Virology; Medicine; Human immunodeficiency virus (HIV); Gene; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000315702,0.0003903357,0.0003514639,0.001380528,0.002431324,0.001300237,0.0007405208,0.0003686083,0.002072271],"category_scores_gemma":[0.0006326818,0.0002808465,0.0002773551,0.002679953,0.0007839922,0.0002031469,0.0004361045,0.0003514091,0.0002680105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01549625,"about_ca_system_score_gemma":0.01914798,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9932402,"about_ca_topic_score_gemma":0.9946206,"domain_scores_codex":[0.9994951,0.00002624334,0.00002576249,0.000117717,0.0001219254,0.0002132575],"domain_scores_gemma":[0.9989113,0.00004658108,0.0001661255,0.00003450808,0.0005347171,0.0003068151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001231427,0.00002018814,0.9899345,0.00005149267,0.00003615168,0.0002579264,0.0006147677,0.0001559317,0.002045769,0.000105257,0.001072121,0.005582849],"study_design_scores_gemma":[0.000006349004,0.00002336382,0.9968162,0.00002775282,0.00002025865,0.0001512978,0.00109687,0.0002298107,0.0002869129,0.00001842276,0.001313053,0.00000975122],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932636,0.0007794233,0.0001518019,0.0001323579,0.00001167908,0.00004436095,0.003373336,0.00001665761,0.002226681],"genre_scores_gemma":[0.9976628,0.0002376175,0.0002219004,0.00006553585,0.000003560973,0.000007563815,0.001045952,0.000005712451,0.0007493753],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01549625,"threshold_uncertainty_score":0.1124337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01151944819616048,"score_gpt":0.2593415243996104,"score_spread":0.24782207620345,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}