{"id":"W4389074075","doi":"10.1097/qad.0000000000003799","title":"Primary HIV infection features colonic damage and neutrophil inflammation yet containment of microbial translocation","year":2023,"lang":"en","type":"article","venue":"AIDS","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Indigenous and Northern Affairs Canada; Ministero della Salute","keywords":"Biology; Immunology; Chromosomal translocation; Immune system; Inflammation; Gut flora; Myeloperoxidase; Microbiology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000126953,0.00006499034,0.00008500093,0.00004936298,0.00004690898,0.000007977888,0.00003201686,0.00009475624,0.000003523429],"category_scores_gemma":[0.000008560952,0.00006606455,0.0000273294,0.00008520691,0.00003759136,0.00000408107,0.00002468438,0.00004621349,0.000004713596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001581231,"about_ca_system_score_gemma":0.00004649975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005424424,"about_ca_topic_score_gemma":0.00006652453,"domain_scores_codex":[0.9995577,0.00003846242,0.000128404,0.0001335427,0.00003977115,0.0001020907],"domain_scores_gemma":[0.9997789,0.000006126461,0.00005242029,0.0001037869,0.00003351675,0.00002523615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005552498,0.00001352546,0.005650971,0.00007464756,0.00001494831,4.164278e-7,0.0001156212,0.00002949754,0.9893831,0.0001304239,0.002102934,0.002428388],"study_design_scores_gemma":[0.0007292728,0.0003695716,0.5316197,0.00002138411,0.00001623983,0.000006778072,0.00002386088,0.00001046277,0.4593706,0.00004162997,0.007704707,0.00008578692],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989028,0.0001648753,0.0001046818,0.000453481,0.00008332925,0.0001711032,0.00001732594,0.0000133207,0.00008909668],"genre_scores_gemma":[0.998059,0.0008311328,0.000113107,0.000131864,0.00007499491,0.000008684077,0.0005538675,0.000008204842,0.0002191922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5300125,"threshold_uncertainty_score":0.2694034,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005497723543222876,"score_gpt":0.2337015982416519,"score_spread":0.228203874698429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}