{"id":"W4389083107","doi":"10.1099/mgen.0.001141","title":"Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993–2019","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Women and Children’s Health Research Institute; University of Alberta","funders":"Ministry of Economic Development and Trade, Government of Alberta; Pfizer Canada; Merck Canada; Government of Alberta; Pfizer","keywords":"Biology; Multilocus sequence typing; Antibiotic resistance; Microbiology; Streptococcus pneumoniae; Typing; Serotype; Carriage; Tigecycline; Tetracycline; Molecular epidemiology; Virology; Genotype; Antibiotics; Medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000435949,0.0005241855,0.0003281332,0.002970565,0.00148815,0.001245692,0.0005377246,0.0003378324,0.0008578062],"category_scores_gemma":[0.001036089,0.0002646584,0.0004171239,0.005783914,0.0005510316,0.0001365806,0.000693538,0.0003670302,0.0002680912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01212925,"about_ca_system_score_gemma":0.01879525,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9765106,"about_ca_topic_score_gemma":0.9852761,"domain_scores_codex":[0.9992579,0.00002155637,0.00003125737,0.0001112862,0.000364318,0.0002138408],"domain_scores_gemma":[0.9987308,0.00004495162,0.0001534796,0.00002582344,0.000794373,0.0002505642],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009715706,0.00007480355,0.9181045,0.0003571987,0.0001374657,0.002215456,0.004354273,0.001396092,0.03185732,0.0003611805,0.006218883,0.03395124],"study_design_scores_gemma":[0.000008322356,0.00004176492,0.9890243,0.00006408253,0.00003486187,0.0003173354,0.001650631,0.0002668945,0.0008128035,0.0000202956,0.007748384,0.0000103053],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9667413,0.002527745,0.0004635019,0.0002831666,0.00003531479,0.0001066889,0.02518445,0.00004863166,0.004609199],"genre_scores_gemma":[0.9512801,0.003105863,0.001813564,0.0005143713,0.00002808518,0.00006121147,0.03765474,0.00003107928,0.00551096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02348936,"threshold_uncertainty_score":0.08800423,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008675246165884103,"score_gpt":0.2283149193532175,"score_spread":0.2196396731873334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}