{"id":"W4389130840","doi":"10.1038/s41564-023-01527-3","title":"Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain","year":2023,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of General Medical Sciences; Royal College of Surgeons of England; National Science Foundation","keywords":"Oral Microbiome; Microbiome; Biology; Disease; Medicine; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002590883,0.0002030623,0.0004336296,0.001176247,0.0008228084,0.001017434,0.0004049279,0.0004490283,0.003233125],"category_scores_gemma":[0.0009155135,0.0003059352,0.0002006987,0.002081056,0.0009447329,0.0002462547,0.001365007,0.0004729135,0.0004206223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00106297,"about_ca_system_score_gemma":0.0004165427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04381374,"about_ca_topic_score_gemma":0.06732918,"domain_scores_codex":[0.9996506,0.00005913899,0.00001832343,0.00009259488,0.00009632467,0.0000830616],"domain_scores_gemma":[0.9997477,0.00004878727,0.0000633032,0.00003091637,0.00005893708,0.0000502753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00252227,0.0001154678,0.7756661,0.0004216723,0.0002235127,0.004852309,0.02990188,0.0003400231,0.09964152,0.001606427,0.001683699,0.08302517],"study_design_scores_gemma":[0.000004557983,0.00003860465,0.9950953,0.00001535811,0.00001719595,0.0004558309,0.001745985,0.00005560247,0.0004536884,0.00008476675,0.002027398,0.000005712102],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970113,0.0008617631,0.0001484677,0.0001675834,0.00001284789,0.000005000496,0.0003294496,0.00000588605,0.001457747],"genre_scores_gemma":[0.9976066,0.0004826445,0.000117055,0.00005827328,0.000009232543,0.000002973032,0.0001668697,0.000009520067,0.001546809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04381374,"threshold_uncertainty_score":0.08711743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005203367342294335,"score_gpt":0.2518365485618841,"score_spread":0.2466331812195897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}