{"id":"W4389136670","doi":"10.1128/spectrum.02832-23","title":"Temporal metagenomic characterization of microbial community structure and nitrogen modification genes within an activated sludge bioreactor system","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Regina","funders":"","keywords":"Wastewater; Metagenomics; Microbial population biology; Activated sludge; Sewage treatment; Aquatic ecosystem; Ecosystem; Ecology; Environmental science; Bioreactor; Microbial ecology; Biology; Environmental engineering; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002695185,0.0003934752,0.0005435795,0.0005740036,0.0003912145,0.0005675018,0.0002720599,0.0003142716,0.0002775976],"category_scores_gemma":[0.0002613535,0.0001753529,0.0004346291,0.0005972437,0.0002109255,0.0002570635,0.0003090697,0.0004084403,0.0001384136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006268295,"about_ca_system_score_gemma":0.000759444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01662553,"about_ca_topic_score_gemma":0.02082071,"domain_scores_codex":[0.9996527,0.00002235834,0.00001943756,0.0001141076,0.0001224207,0.00006895915],"domain_scores_gemma":[0.9997973,0.00002283016,0.00004321035,0.00001174508,0.00008759034,0.00003734964],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000099644,0.00003167204,0.004353828,0.00002550622,0.00001445186,0.00001832556,0.00005119704,0.0001940551,0.993692,0.00001299969,0.00002112768,0.001485135],"study_design_scores_gemma":[0.00002102167,0.0009244027,0.4723822,0.00001995312,0.0001531355,0.0001473796,0.0007027617,0.01255905,0.5108619,0.0001151335,0.002059341,0.0000537309],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997036,0.0001849434,0.001069969,0.00002937949,0.000005167098,0.0000407974,0.001371671,0.00002481021,0.0002373253],"genre_scores_gemma":[0.9915507,0.0002209982,0.004125822,0.00005500435,0.000005193797,0.00009029168,0.002971366,0.00001472016,0.0009659596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01662553,"threshold_uncertainty_score":0.03305751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01766893474827472,"score_gpt":0.2157224739645378,"score_spread":0.1980535392162631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}