{"id":"W4389178930","doi":"10.1089/fpd.2023.0075","title":"A Review on Microbiological Source Attribution Methods of Human Salmonellosis: From Subtyping to Whole-Genome Sequencing","year":2023,"lang":"en","type":"review","venue":"Foodborne Pathogens and Disease","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; BC Centre for Disease Control; University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Subtyping; Attribution; Salmonella; Whole genome sequencing; Biology; Human health; Computational biology; Biotechnology; Data science; Computer science; Genome; Environmental health; Medicine; Genetics; Gene; Bacteria; Psychology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001127398,0.0005660591,0.002247439,0.00005258386,0.0002109059,0.00003132877,0.0004081732,0.0003454832,0.00009671349],"category_scores_gemma":[0.0006622015,0.0002319525,0.0007837695,0.0006566307,0.00009147804,0.00002919489,0.0003201937,0.0002844338,0.0001278081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008707556,"about_ca_system_score_gemma":0.00004935267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001130421,"about_ca_topic_score_gemma":0.0000180497,"domain_scores_codex":[0.9958138,0.001453333,0.001031009,0.00106491,0.0001225421,0.0005143985],"domain_scores_gemma":[0.9975409,0.0009294408,0.0005286213,0.0002531129,0.00007700094,0.000670962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004318865,0.0001227625,0.0001691565,0.009480601,0.0001951083,0.0000372964,0.00002732949,0.000001642135,0.03715158,0.00007039199,0.0006596804,0.9520413],"study_design_scores_gemma":[0.00008668278,0.0005437183,0.004048782,0.03410313,0.001495108,0.000009046025,0.00004691191,0.000002040117,0.00001201907,0.0004248252,0.9584481,0.0007796153],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01401833,0.9792144,0.00004616724,0.0002176832,0.00009253427,0.001038619,0.005248185,0.0001098527,0.00001422243],"genre_scores_gemma":[0.0004110685,0.9926014,0.0001742331,0.001080869,0.0003537788,0.0001886817,0.005128687,0.000009129211,0.00005216867],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9577885,"threshold_uncertainty_score":0.9458749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.175109885408704,"score_gpt":0.3766134228517589,"score_spread":0.2015035374430549,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}