{"id":"W4389218530","doi":"10.1093/jmcb/mjad076","title":"The capsid revolution","year":2023,"lang":"en","type":"review","venue":"Journal of Molecular Cell Biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Canadian Institutes of Health Research; Francis Crick Institute; Cancer Research UK; Wellcome Trust","keywords":"Capsid; Human immunodeficiency virus (HIV); Biology; Virology; Viral life cycle; Computational biology; Virus; Viral replication","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008137459,0.0002602091,0.001058464,0.000226383,0.0001884113,0.00001457934,0.0005745954,0.0005772621,0.00006436749],"category_scores_gemma":[0.00022807,0.0001322101,0.0008118012,0.0002058503,0.0002544533,0.00001558193,0.0001305764,0.0009409045,0.003450145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001294069,"about_ca_system_score_gemma":0.0005152935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001177181,"about_ca_topic_score_gemma":0.000004627519,"domain_scores_codex":[0.9972361,0.001268262,0.0007867489,0.000191909,0.00004724126,0.0004697761],"domain_scores_gemma":[0.9981695,0.0005271552,0.0007967446,0.0003259259,0.0001353507,0.00004531816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003328799,0.00006858133,0.000002065873,0.0008156158,0.00154934,0.0003419984,0.00001178576,3.564659e-7,0.002192323,0.0002346176,0.01407606,0.980674],"study_design_scores_gemma":[0.0003717363,0.0004709464,7.108994e-7,0.000660025,0.0004613569,0.0003641498,0.00001140286,2.544634e-8,0.0002718402,0.0001502398,0.9971273,0.0001102482],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00002356409,0.9973304,0.00005221666,0.00008543164,0.001123357,0.0002861086,0.00005979323,0.00001245181,0.00102671],"genre_scores_gemma":[0.00006314537,0.9970921,0.00002492312,0.00001487833,0.00007685919,0.00002065242,0.0001883341,0.00003139395,0.002487682],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9830512,"threshold_uncertainty_score":0.9973258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03534461545296871,"score_gpt":0.3288345383472918,"score_spread":0.2934899228943231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}