{"id":"W4389261533","doi":"10.1158/2326-6074.tumimm23-b037","title":"Abstract B037: Single-cell analysis reveals immune characteristics linked to poor prognosis in <i>Fusobacterium nucleatum</i>-infected colorectal cancer","year":2023,"lang":"en","type":"article","venue":"Cancer Immunology Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Fusobacterium nucleatum; Immune system; Transcriptome; Colorectal cancer; Biology; Cancer research; Cell; Cancer; Immunology; Gene expression; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00101699,0.0003004181,0.0006206369,0.0009337612,0.000245695,0.00007604998,0.0005988654,0.0005495365,0.0003559897],"category_scores_gemma":[0.00023404,0.0003108445,0.000194281,0.003026646,0.0002696038,0.00001086364,0.0005116495,0.0007817875,0.0002166178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003974735,"about_ca_system_score_gemma":0.0006423508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001562955,"about_ca_topic_score_gemma":0.001595676,"domain_scores_codex":[0.9965159,0.0003573981,0.000631109,0.0008637186,0.0002435815,0.001388304],"domain_scores_gemma":[0.9985368,0.00009514253,0.0001561582,0.0004571934,0.0005676622,0.0001870972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005646889,0.0002254755,0.08248444,0.00009099177,0.0003975835,0.00002989034,0.0002714933,0.00001738214,0.9108744,0.000002813909,0.003114874,0.001925954],"study_design_scores_gemma":[0.0007141249,0.0004699632,0.8033562,0.00006573619,0.00005525843,0.000003336278,0.0001277811,0.00001623121,0.1878575,0.000004194803,0.007042201,0.0002874549],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942663,0.001718247,0.000002539135,0.00197953,0.000459183,0.0008592159,0.0003346888,0.00006220029,0.0003181494],"genre_scores_gemma":[0.9925341,0.003987992,0.00004049835,0.0002187968,0.0002451603,0.0007144009,0.0006902625,0.00006947116,0.001499308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.723017,"threshold_uncertainty_score":0.9999344,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04287220124879889,"score_gpt":0.356041591496834,"score_spread":0.3131693902480351,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}