{"id":"W4389291907","doi":"10.20944/preprints202312.0029.v1","title":"Genomics of Re-emergent &lt;em&gt;Aeromonas salmonicida&lt;/em&gt; in Atlantic Salmon Outbreaks","year":2023,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Aeromonas salmonicida; Biology; Psychrophile; Virulence; Salmo; Antibiotic resistance; Plasmid; Microbiology; Comparative genomics; Genetics; Aeromonas; Genome; Population; Genomics; Gene; Antibiotics; Bacteria; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001790517,0.0002501555,0.0002665607,0.0005389613,0.0002820365,0.0004131406,0.0001378547,0.0003151429,0.0007873133],"category_scores_gemma":[0.0003194353,0.000161769,0.0004541568,0.0007492569,0.0001926668,0.0002234813,0.0004659678,0.0004047854,0.0002644271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000446215,"about_ca_system_score_gemma":0.0005691051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008892301,"about_ca_topic_score_gemma":0.009056925,"domain_scores_codex":[0.9998177,0.00001298505,0.00001357326,0.00007169605,0.00003518839,0.00004896731],"domain_scores_gemma":[0.9997241,0.00003059448,0.0001208824,0.00001615781,0.00005763928,0.000050582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005328683,0.0001009963,0.2521391,0.0002142622,0.00009762947,0.0007301493,0.001014684,0.0005313364,0.7299542,0.0001564225,0.0005536,0.0139748],"study_design_scores_gemma":[0.000006886934,0.0001705727,0.9907067,0.00001995571,0.00004284242,0.000334906,0.0008676075,0.0006124934,0.005668107,0.0000492491,0.00150996,0.00001067519],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972768,0.000218861,0.0004042926,0.00006072921,0.000003876287,0.00001461043,0.001572904,0.00001468644,0.0004332363],"genre_scores_gemma":[0.9932699,0.0002625957,0.001030355,0.0001205916,0.000007180483,0.00002782145,0.004226036,0.00001802039,0.001037522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008892301,"threshold_uncertainty_score":0.01768106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06004370247872623,"score_gpt":0.2969616465408254,"score_spread":0.2369179440620991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}