{"id":"W4389303440","doi":"10.1101/2023.12.01.569630","title":"Strain-specific evolution and host-specific regulation of transposable elements in the model plant symbiont <i>Rhizophagus irregularis</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Mitacs; University of Ottawa","keywords":"Rhizophagus irregularis; Biology; Transposable element; Genome; Evolutionary biology; Host (biology); Computational biology; Genetics; Gene; Arbuscular mycorrhizal; Symbiosis; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003366431,0.000235024,0.0002771637,0.0006357045,0.0002477591,0.0004459645,0.0001983542,0.0002335944,0.001033562],"category_scores_gemma":[0.0006222815,0.0001610936,0.0003661749,0.0005300529,0.0001449447,0.0002003012,0.0003936377,0.0003872996,0.0007930717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002754406,"about_ca_system_score_gemma":0.0001421593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001582617,"about_ca_topic_score_gemma":0.00242675,"domain_scores_codex":[0.9997594,0.00002882455,0.0000176524,0.0001065578,0.00004904221,0.00003864161],"domain_scores_gemma":[0.9996501,0.00011343,0.0001061045,0.0000470441,0.00004735767,0.0000359827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000181747,0.00002078935,0.01403065,0.000140414,0.00003764357,0.00007551593,0.0001145282,0.0007071933,0.9782121,0.0001198357,0.0002865068,0.006073054],"study_design_scores_gemma":[0.00002906484,0.0003724782,0.5448484,0.0001027271,0.0001888363,0.001092842,0.0004608213,0.02531764,0.4049605,0.0007416402,0.02179566,0.00008931502],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823326,0.0006853117,0.005757227,0.00007163071,0.00001398204,0.00001659624,0.009548936,0.0005097958,0.001063928],"genre_scores_gemma":[0.9729536,0.0003096859,0.008014554,0.00005957087,0.000006322786,0.00004212637,0.01716551,0.000369361,0.001079339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001582617,"threshold_uncertainty_score":0.003457665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02273231203375975,"score_gpt":0.1968646513416389,"score_spread":0.1741323393078791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}